Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0584 and PP_0585 are separated by 167 nucleotidesPP_0585 and PP_0586 overlap by 4 nucleotidesPP_0586 and PP_0587 are separated by 52 nucleotidesPP_0587 and PP_0588 are separated by 145 nucleotides PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272 _0584 PP_0585: PP_0585 - putative metal-sensitive transcriptional regulator, MerR family, at 683,440 to 683,850 _0585 PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246 _0586 PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685 _0587 PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028 _0588
Group Condition PP_0584 PP_0585 PP_0586 PP_0587 PP_0588
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -3.3 +0.1 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -2.5 -0.2 +0.0 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.1 -1.4 -0.6 -0.5 N.D.
pH Valerolactone (C) pH 6.5 -0.2 -1.3 -0.3 -0.5 N.D.
temperature Growth at 25C -0.2 -1.5 -0.2 -0.4 N.D.
carbon source L-Leucine (C) -0.6 -0.4 -0.8 -0.3 N.D.
nitrogen source NAG (N); with MOPS -0.2 -2.2 +0.1 +0.4 N.D.
stress Growth with Chloride 200 mM; with MOPS -0.1 -1.6 -0.0 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -1.9 +0.1 -0.2 N.D.
carbon source Crotonic (C) -0.0 -1.4 -0.6 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -1.5 -0.5 -0.2 N.D.
nitrogen source Ammonium chloride and TNT (N) -0.2 -0.0 -1.6 +0.0 N.D.
pH Growth at pH6 and (C) D-Glucose -0.0 -1.7 -0.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 -1.2 -0.6 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.9 -0.4 -0.5 N.D.
temperature shift Temperature shift 10_to_21; with MOPS -0.2 -1.1 +0.2 -0.5 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.1 -0.2 -0.3 N.D.
carbon source carbon source D-Glucose 55.5 mM +0.2 -1.3 +0.1 -0.3 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.3 -1.1 -0.2 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 -1.2 -0.3 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 -1.2 -0.2 +0.4 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.1 -1.0 +0.2 +0.5 N.D.
nitrogen source D-2-Aminobutyric (N) -0.2 -1.1 +0.4 +0.7 N.D.
nitrogen source NAG (N); with MOPS -0.1 +1.3 -0.3 -0.2 N.D.
carbon source D-Glucose (C); with MOPS -0.2 +0.8 +0.2 +0.6 N.D.
carbon source Octanoic (C) -0.1 +1.3 -0.2 +0.4 N.D.
phage P. putida Sci Big MOI 0.1 -0.3 +0.9 +0.2 +0.7 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.5 +0.1 -0.4 N.D.
carbon source acetate (C) -0.2 +1.0 +0.3 +0.6 N.D.
pH Growth at pH7 and (C) D-Glucose -0.2 +1.5 +0.3 +0.2 N.D.
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