Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0550 and PP_0551 are separated by 27 nucleotidesPP_0551 and PP_0552 are separated by 18 nucleotidesPP_0552 and PP_0553 are separated by 28 nucleotidesPP_0553 and PP_0554 overlap by 4 nucleotides PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788 _0550 PP_0551: PP_0551 - MORN domain protein, at 638,816 to 640,744 _0551 PP_0552: PP_0552 - 2,3-butanediol dehydrogenase, at 640,763 to 641,851 _0552 PP_0553: PP_0553 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 641,880 to 642,986 _0553 PP_0554: PP_0554 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta, at 642,983 to 644,005 _0554
Group Condition PP_0550 PP_0551 PP_0552 PP_0553 PP_0554
carbon source 2,3-Butanediol (C) -0.4 +0.0 -0.7 -4.3 -2.9
carbon source 2,3-Butanediol (C) -0.3 +0.2 -0.1 -2.3 -2.2
nitrogen source 2,6-diaminopimelic (N) -1.5 -0.1 +0.2 -1.2 -0.3
nitrogen source Propandiamine (N) -2.0 +0.0 -0.0 -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 -0.0 -0.5 -0.5 +0.2
stress Growth with Chloride 500 mM; with MOPS -1.2 -0.0 -0.1 -0.3 -0.2
pH Growth at pH6 and (C) D-Glucose -0.6 +0.1 -0.3 -0.7 -0.1
carbon source D-Glucose (C); with MOPS -0.7 +0.1 -0.5 -0.5 -0.0
temperature shift Temperature shift 30_to_34; with MOPS -1.1 +0.2 -0.3 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +0.1 +0.1 -0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 +0.0 +0.0 -0.5 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -0.3 +0.2 +0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 +0.1 -0.1 -0.0 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 +0.6 +0.0 -0.3 +0.0
stress R2A with Fusaric 240 ug/mL +0.5 -0.3 -0.3 -0.3 -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.1 -0.1 +0.4 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 +0.2 -0.2 +0.7 -0.1
carbon source ferulate (C); with MOPS -0.3 -0.5 -0.3 +0.6 +0.2
no stress control Growth with no stress -0.6 +0.4 +0.2 +0.3 -0.4
carbon source ferulate (C); with MOPS +1.2 -0.6 +0.3 -0.7 -0.3
carbon source ferulate (C); with MOPS -0.2 -0.6 +0.2 +0.6 -0.1
stress R2A with Fusaric 480 ug/mL +0.7 -0.7 -0.2 +0.2 +0.1
carbon source carbon source 4-vinylphenol 0.01 mM -0.8 +0.1 +0.3 +0.8 -0.2
stress R2A with Fusaric 480 ug/mL +0.5 -0.5 -0.1 +0.5 +0.2
carbon source carbon source 3-O-methyl-glucose 10 mM -0.4 +0.2 -0.1 +1.2 -0.1
phage P. putida Sci small MOI 0.1 +0.9 +0.1 -0.1 -0.4 +0.3
pH pH 7 -0.4 -0.0 +0.4 +1.0 -0.0
carbon source carbon source 3-O-methyl-glucose 50 mM -0.5 +0.2 +0.4 +1.1 -0.1
nitrogen source TNT (N) +0.2 +0.1 +0.3 +1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.2 +0.8 -0.1 +0.2
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