Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0545	PP_0546	PP_0547	PP_0548	PP_0549
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.4	-6.2	N.D.	+0.5
carbon source	ferulate (C); with MOPS	-0.9	-0.4	-4.6	N.D.	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-0.3	-5.8	N.D.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.0	-6.2	N.D.	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	+0.1	-5.9	N.D.	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.0	-5.3	N.D.	-0.2
carbon source	Delta-Undecalactone (C)	-0.6	-0.5	-4.0	N.D.	+0.1
carbon source	L-Lysine (C)	+0.0	-0.0	-4.9	N.D.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	-0.1	-5.2	N.D.	+0.2
carbon source	Delta-Decalactone (C)	-0.3	-0.3	-4.1	N.D.	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.0	-0.1	-4.8	N.D.	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	+0.2	-3.9	N.D.	-0.6
carbon source	Delta-Undecalactone (C)	-0.8	-0.4	-3.3	N.D.	+0.0
carbon source	ferulate (C); with MOPS	-0.6	+0.1	-4.1	N.D.	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.1	-4.9	N.D.	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.1	-0.1	-3.8	N.D.	-0.1
carbon source	Trisodium citrate (C)	-0.5	+0.3	-3.5	N.D.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	+0.0	-3.9	N.D.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	-0.0	-3.9	N.D.	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.1	-4.2	N.D.	+0.4
carbon source	L-Lysine (C)	-0.1	-0.0	-3.6	N.D.	+0.2
carbon source	L-Lysine (C)	+0.3	+0.0	-3.7	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.1	-2.7	N.D.	+0.6
carbon source	Ethanol (C)	-0.3	-0.3	+3.7	N.D.	-0.0
carbon source	D-Lysine 10 mM (C)	-0.1	-0.1	+3.8	N.D.	-0.3
carbon source	D-Lysine 10 mM (C)	-0.1	-0.1	+3.8	N.D.	+0.2
carbon source	Hexanoic (C)	+0.1	-0.1	+3.7	N.D.	+0.2
carbon source	D-Glucose (C) 1.25 mM	+0.2	+0.0	+4.0	N.D.	-0.0
carbon source	D-Fructose (C)	-0.0	+0.0	+4.4	N.D.	+0.1
carbon source	D-Glucose (C) 2.5 mM	+0.2	-0.1	+5.0	N.D.	-0.1