Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0542	PP_0543	PP_0544	PP_0545	PP_0546
nitrogen source	Ethanolamine (N)	-3.5	-3.1	-0.6	-0.9	-0.8
nitrogen source	Ethanolamine (N)	-3.0	-2.7	-0.6	-1.0	-1.1
pH	Growth at pH6 and (C) D-Glucose	-1.2	-0.3	+0.0	-0.0	-0.3
carbon source	2,3-Butanediol (C)	-0.0	+0.1	-0.0	-1.5	-0.3
carbon source	Delta-Undecalactone (C)	-0.1	-0.1	-0.1	-0.6	-0.5
pH	pH 8	-1.0	-0.3	-0.3	+0.2	+0.1
carbon source	Delta-Undecalactone (C)	-0.1	+0.2	+0.1	-0.8	-0.4
carbon source	ferulate (C); with MOPS	-0.1	+0.2	+0.3	-0.9	-0.4
carbon source	Trisodium citrate (C)	-0.7	-0.0	+0.2	-0.5	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	-0.3	-0.1	+0.4	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.9	-0.1	+0.1	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.5	-0.2	+0.2	-0.3
temperature shift	Temperature shift 30_to_25	-0.3	-0.3	+0.1	-0.4	+0.2
temperature	Growth at 25C	-0.2	-0.3	+0.1	-0.4	+0.3
carbon source	3-Hydroxydecanoic (C)	-0.5	+0.1	+0.3	-0.3	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	-0.5	+0.3	-0.4	+0.4
carbon source	Valerolactone (C)	+0.4	-0.4	-0.1	-0.1	+0.4
nitrogen source	nitrogen source nitrite 1mM	+0.4	+0.1	+0.3	-0.5	-0.2
pH	Growth at pH6 and (C) D-Glucose	+0.7	-0.3	+0.1	-0.4	+0.2
temperature shift	Temperature shift 30_to_21; with MOPS	+0.4	-0.2	+0.3	-0.3	+0.2
carbon source	ferulate (C); with MOPS	+0.2	+0.5	+0.2	-0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.2	-0.2	+0.2	+0.7
nitrogen source	nitrate (N)	+0.7	+0.0	+0.2	-0.3	-0.2
phage	P. putida Sci small MOI 0.1	+0.5	+0.2	+0.3	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	-0.1	+0.3	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	+1.0	+0.0	+0.1	+0.1	-0.3
pH	Valerolactone (C) pH 6.5	-0.2	+0.4	+0.1	+0.4	+0.3
phage	P. putida Sci small MOI 0.1	+0.6	+0.1	+0.4	-0.1	+0.2
nitrogen source	TNT (N)	+0.4	+0.5	-0.1	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.1	+0.2	+0.2	+0.3