Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0505	PP_0506	PP_0507	PP_0508	PP_0509
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-1.2	-3.1	-3.1	-3.6	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.5	-2.4	-2.3	-2.8	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.8	-1.3	-2.0	-4.1	+0.4
carbon source	carbon source Bisabolene 48.9 mM	-1.2	-1.8	-2.4	-2.0	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2	-0.4	-0.7	-2.3	-1.5
carbon source	carbon source Bisabolol 45 mM	-1.1	-2.2	-1.4	-0.8	+0.8
pH	pH 5	-0.2	-2.3	-1.5	-1.1	+0.7
carbon source	L-tyrosine 5 mM (C)	-0.2	-0.5	-0.9	-2.1	-0.7
pH	pH 7	-0.1	-1.3	-1.3	-1.2	-0.1
stress	Growth with Chloride 200 mM; with MOPS	+0.4	-0.1	+0.2	-3.4	-0.9
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2	-0.6	-0.1	-2.1	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.8	-0.1	-0.0	-0.3	-2.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2	-0.6	-1.3	-1.6	+0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.0	-0.5	-0.9	-1.2	-0.6
pH	pH 8	+0.0	-1.9	-0.4	-1.7	+0.7
carbon source	L-tyrosine 5 mM (C)	-0.4	-0.8	-1.0	-0.8	-0.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.4	-1.3	-1.2	-0.6	+0.5
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.2	-1.1	-1.2	-1.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	+0.2	-0.7	-1.0	-0.4
pH	pH 4	-0.1	-1.7	-0.8	-0.2	+0.3
pH	pH 6	-0.1	-2.0	-0.6	+0.1	+0.3
pH	Growth at pH7 and (C) D-Glucose	-1.1	+0.0	+0.4	-1.5	+0.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.3	-1.0	-1.1	-0.6	+1.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.8	-1.3	-0.5	-0.5	+1.1
pH	pH 9	+0.2	-1.2	-1.2	-0.2	+0.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.0	-0.8	-0.9	-1.2	+1.3
carbon source	carbon source Glycerol 108.6 mM	-0.3	-1.5	-0.9	+0.2	+1.0
carbon source	carbon source D-Glucose 55.5 mM	+0.6	-0.5	-0.2	-1.6	+1.3
pH	Valerolactone (C) pH 6.5	+0.5	-0.2	+0.2	-1.2	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.2	+0.1	+0.2	+2.0	-0.8