Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0498 and PP_0500 are separated by 1231 nucleotidesPP_0500 and PP_0501 overlap by 8 nucleotidesPP_0501 and PP_0502 are separated by 30 nucleotidesPP_0502 and PP_0503 are separated by 102 nucleotides PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645 _0498 PP_0500: PP_0500 - dTDP-4-rhamnose reductase-related protein, at 589,877 to 590,761 _0500 PP_0501: PP_0501 - NAD-dependent epimerase/dehydratase family protein, at 590,754 to 591,686 _0501 PP_0502: PP_0502 - conserved protein of unknown function, at 591,717 to 592,160 _0502 PP_0503: PP_0503 - Major facilitator family transporter, at 592,263 to 593,468 _0503
Group Condition PP_0498 PP_0500 PP_0501 PP_0502 PP_0503
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 N.D. N.D. -1.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 N.D. N.D. -1.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. N.D. -0.9 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 N.D. N.D. -1.0 -0.5
pH pH 8 -0.3 N.D. N.D. -1.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 N.D. N.D. -0.6 -0.4
carbon source carbon source Glycerol 108.6 mM -0.1 N.D. N.D. -1.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. N.D. -0.9 -0.3
pH Growth at pH8 and (C) D-Glucose -0.1 N.D. N.D. -1.0 -0.3
carbon source Valerolactone (C) -0.1 N.D. N.D. -1.2 +0.1
temperature shift Temperature shift 30_to_25; with MOPS +0.1 N.D. N.D. -0.8 -0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. N.D. -0.4 -0.9
carbon source Glutaric (C) -0.0 N.D. N.D. -1.0 +0.3
stress R2A with Fusaric 480 ug/mL +0.1 N.D. N.D. -1.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. N.D. -0.9 +0.3
carbon source ferulate (C); with MOPS +0.1 N.D. N.D. -1.4 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. N.D. -0.4 +0.9
carbon source D-Glucose (C) +0.3 N.D. N.D. +0.7 -0.4
nitrogen source D-2-Aminobutyric (N) +0.4 N.D. N.D. +0.7 -0.2
nitrogen source D-2-Aminobutyric (N) +0.3 N.D. N.D. +1.3 -0.3
phage P. put South MOI 10 +0.4 N.D. N.D. +0.5 +0.5
phage P. putida PUT10 MOI 0.1 +0.5 N.D. N.D. +0.5 +0.3
phage P. put PUT 10 MOI 1 +0.3 N.D. N.D. +0.6 +0.5
phage PUT 8 MOI 1 +0.5 N.D. N.D. +0.7 +0.2
phage P. putida South MOI 0.1 +0.7 N.D. N.D. +0.1 +0.6
phage PUT8 MOI 0.1 +0.4 N.D. N.D. +0.8 +0.4
phage P. put South MOI 1 +0.5 N.D. N.D. +0.4 +0.9
phage PUT8 MOI 0.1 +0.5 N.D. N.D. +0.6 +0.6
phage P. put PUT 10 MOI 10 +0.5 N.D. N.D. +0.4 +1.1
phage P. put PUT 10 MOI 10 +0.5 N.D. N.D. +0.6 +1.0
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