Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0487	PP_0488	PP_0489	PP_0490	PP_0491
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.2	-0.3	-0.4	+0.1	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.0	+0.1	-0.2	-0.9	-0.9
carbon source	ferulate (C); with MOPS	-0.3	-0.4	-0.1	+0.1	-1.1
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.0	-0.2	-0.3	-0.5	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-0.7	-0.2	-0.3	+0.0
stress	R2A with Fusaric 480 ug/mL	-0.2	-0.1	-0.3	-0.6	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	+0.1	-0.6	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	-0.3	-0.2	-1.0	-0.1
carbon source	ferulate (C); with MOPS	-0.3	-0.4	+0.2	-0.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	-0.1	-0.3	-0.6	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	+0.1	-0.3	-0.8	-0.2
carbon source	acetate (C)	-0.5	-0.3	+0.0	+0.5	-0.4
phage	P. putida Sci Big MOI 0.1	+0.5	-0.4	+0.1	-0.0	-0.7
carbon source	1,3-Butandiol (C)	-0.2	-0.0	+0.1	+0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	-0.0	+0.4	-0.7
nitrogen source	Propandiamine (N)	-0.1	+0.4	+0.2	+0.3	-0.5
nitrogen source	NAG (N); with MOPS	-0.2	-0.3	-0.1	+0.5	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7	+0.3	-0.1	-0.2	-0.3
no stress control	Growth with no stress	+0.2	-0.5	+0.2	+0.3	+0.4
nitrogen source	D-2-Aminobutyric (N)	-0.1	-0.4	+0.1	+0.5	+0.6
nitrogen source	nitrate (N)	+0.4	-0.4	+0.1	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.3	+0.0	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.1	+0.4	+0.6
phage	P. put South MOI 10	+0.2	+0.5	+0.3	+0.5	+0.1
phage	P. putida South MOI 10	+0.5	+0.4	-0.1	+0.5	+0.3
phage	P. putida Sci small MOI 0.1	-0.1	+0.4	+0.2	+0.7	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.3	+0.4	+1.1	+0.2
phage	P. putida Missley MOI 0.1	+0.7	+0.4	+0.4	+0.2	+0.1
phage	P. putida PUT 7 MOI 1	+0.1	+0.5	+0.2	+0.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.0	-0.0	+1.3	+0.5