Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0482 and PP_0483 are separated by 72 nucleotidesPP_0483 and PP_0484 are separated by 129 nucleotidesPP_0484 and PP_0485 are separated by 9 nucleotidesPP_0485 and PP_0486 are separated by 90 nucleotides PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588 _0482 PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495 _0483 PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019 _0484 PP_0485: PP_0485 - Single-stranded DNA-binding protein, at 571,029 to 571,574 _0485 PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089 _0486
Group Condition PP_0482 PP_0483 PP_0484 PP_0485 PP_0486
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.1 N.D. -3.0 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.9 N.D. -2.8 N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.0 N.D. -2.4 N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 N.D. -2.9 N.D. -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. -2.0 N.D. -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -2.2 N.D. -0.1
pH Growth at pH6 and (C) D-Glucose +0.1 N.D. -2.1 N.D. -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -1.7 N.D. -0.2
carbon source D-Glucose (C); with MOPS -0.5 N.D. -1.2 N.D. -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 N.D. -2.0 N.D. +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -1.6 N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 N.D. -1.7 N.D. +0.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.1 N.D. -1.5 N.D. -0.3
temperature shift Temperature shift 30_to_4; with MOPS +0.0 N.D. -1.8 N.D. +0.1
pH Growth at pH6 and (C) Trisodium citrate +0.2 N.D. -1.9 N.D. +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -1.7 N.D. -0.0
nitrogen source NAG (N); with MOPS +0.2 N.D. -1.7 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. -1.4 N.D. +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 N.D. -1.2 N.D. -0.4
temperature Growth at 30C; with MOPS +0.2 N.D. -1.4 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 N.D. -1.3 N.D. +0.2
nitrogen source NAG (N); with MOPS +0.7 N.D. -1.5 N.D. -0.0
carbon source Levulinic Acid (C) +0.5 N.D. -1.2 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 N.D. -0.7 N.D. -0.4
carbon source Levulinic Acid (C) +0.6 N.D. -1.1 N.D. +0.2
phage P. putida Sci Big MOI 0.1 +0.5 N.D. -1.1 N.D. +0.3
carbon source L-Phenylalanine 5 mM (C) +0.4 N.D. -1.0 N.D. +0.4
carbon source 3-methyl-1-butanol (C) +1.2 N.D. -0.7 N.D. -0.0
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.4 N.D. +1.4 N.D. +0.2
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL +0.2 N.D. +2.0 N.D. -0.1
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