Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0477 and PP_0478 are separated by 15 nucleotidesPP_0478 and PP_0479 are separated by 22 nucleotidesPP_0479 and PP_0480 are separated by 42 nucleotidesPP_0480 and PP_0481 are separated by 172 nucleotides PP_0477: PP_0477 - 30S ribosomal protein S11, at 561,870 to 562,259 _0477 PP_0478: PP_0478 - 30S ribosomal protein S4, at 562,275 to 562,895 _0478 PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919 _0479 PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348 _0480 PP_0481: PP_0481 - Catalase, at 564,521 to 565,960 _0481
Group Condition PP_0477 PP_0478 PP_0479 PP_0480 PP_0481
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. N.D. N.D. N.D. -0.9
carbon source Lignin Monomers (C) N.D. N.D. N.D. N.D. -0.7
carbon source Acetate Carbon Source (5mM) N.D. N.D. N.D. N.D. -0.7
carbon source Lignin Monomers (C) N.D. N.D. N.D. N.D. -0.7
nitrogen source nitrogen source nitrite 1mM N.D. N.D. N.D. N.D. -0.5
carbon source Acetate Carbon Source (20mM) N.D. N.D. N.D. N.D. -0.5
nitrogen source nitrogen source nitrate 20mM N.D. N.D. N.D. N.D. -0.5
carbon source Acetate Carbon Source (5mM) N.D. N.D. N.D. N.D. -0.5
carbon source 3-methyl-1-butanol (C) N.D. N.D. N.D. N.D. -0.5
nitrogen source NAG (N); with MOPS N.D. N.D. N.D. N.D. -0.4
nitrogen source Ammonium chloride (N) N.D. N.D. N.D. N.D. -0.4
nitrogen source nitrogen source Ammonium chloride 20mM N.D. N.D. N.D. N.D. -0.4
carbon source carbon source 3-O-methyl-glucose 50 mM N.D. N.D. N.D. N.D. -0.4
nitrogen source nitrogen source nitrite 1mM N.D. N.D. N.D. N.D. -0.4
carbon source 4-Hydroxyvalerate (C) (40mM) N.D. N.D. N.D. N.D. -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.4
carbon source Acetate Carbon Source (20mM) N.D. N.D. N.D. N.D. -0.4
carbon source ferulate (C); with MOPS N.D. N.D. N.D. N.D. -0.4
phage P. putida Sci small MOI 0.1 N.D. N.D. N.D. N.D. +0.4
carbon source Vanillin (C) N.D. N.D. N.D. N.D. +0.4
phage P. putida Missley MOI 0.1 N.D. N.D. N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. N.D. N.D. +0.4
phage P. putida Sci small MOI 0.1 N.D. N.D. N.D. N.D. +0.4
phage P. putida South MOI 10 N.D. N.D. N.D. N.D. +0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml N.D. N.D. N.D. N.D. +0.5
carbon source 3-methyl-1-butanol 0.25 vol% (C) N.D. N.D. N.D. N.D. +0.5
phage P. putida PUT 7 MOI 1 N.D. N.D. N.D. N.D. +0.5
stress pinene 10 vol% N.D. N.D. N.D. N.D. +1.6
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