Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0426 and PP_0427 are separated by 10 nucleotidesPP_0427 and PP_0428 are separated by 65 nucleotidesPP_0428 and PP_0429 are separated by 63 nucleotidesPP_0429 and PP_0430 are separated by 67 nucleotides PP_0426: PP_0426 - conserved membrane protein of unknown function, at 514,043 to 515,083 _0426 PP_0427: PP_0427 - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 515,094 to 515,741 _0427 PP_0428: PP_0428 - aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase, at 515,807 to 516,145 _0428 PP_0429: PP_0429 - Oxidoreductase, short chain dehydrogenase/reductase family, at 516,209 to 516,991 _0429 PP_0430: PP_0430 - conserved protein of unknown function, at 517,059 to 518,015 _0430
Group Condition PP_0426 PP_0427 PP_0428 PP_0429 PP_0430
carbon source Delta-Nonalactone (C) -0.0 N.D. -2.0 +0.1 +0.2
pH Growth at pH7 and (C) D-Glucose +0.0 N.D. -1.1 -0.2 -0.3
carbon source p-Coumaric (C) +0.1 N.D. -1.8 +0.0 +0.1
carbon source 1,3-Hexanediol (C) +0.1 N.D. -1.8 +0.1 +0.0
carbon source Delta-Decalactone (C) +0.0 N.D. -1.0 -0.3 -0.1
carbon source p-Coumaric (C) -0.0 N.D. -1.5 +0.1 +0.1
carbon source 3-hydroxypentanoate -0.0 N.D. -1.0 -0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 N.D. -0.4 -0.8 +0.1
carbon source 1,3-Hexanediol (C) +0.1 N.D. -1.3 +0.2 +0.2
carbon source Delta-Decalactone (C) +0.2 N.D. -1.3 +0.5 +0.0
carbon source Myristic (C) +0.3 N.D. +0.1 -0.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 N.D. -0.1 -0.8 +0.4
pH Growth at pH6 and (C) D-Glucose -0.1 N.D. +0.6 -0.2 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 N.D. -0.0 -0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.0 N.D. -0.7 +0.6 -0.1
nitrogen source Urea (N) -0.1 N.D. +0.5 +0.2 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 N.D. -0.2 -0.5 +0.4
carbon source Valeric (C) -0.2 N.D. +0.6 +0.2 -0.3
nitrogen source D-2-Aminobutyric (N) +0.3 N.D. -0.5 +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 N.D. -0.1 +1.0 -0.4
nitrogen source 2,6-diaminopimelic (N) -0.2 N.D. +0.7 -0.1 +0.4
carbon source D-Glucose (C) +0.3 N.D. -0.4 +0.7 +0.1
stress R2A with Fusaric 240 ug/mL -0.2 N.D. +0.0 +1.1 -0.1
stress R2A with Fusaric 240 ug/mL -0.0 N.D. +0.4 +0.8 -0.2
phage P. putida Sci small MOI 0.1 +0.3 N.D. +0.3 +0.4 +0.2
temperature Growth at 25C -0.0 N.D. +0.2 +1.3 +0.0
stress R2A with Fusaric 240 ug/mL -0.1 N.D. +0.1 +1.5 +0.1
phage P. putida Sci small MOI 0.1 +0.2 N.D. +0.6 +1.1 +0.2
phage P. putida PUT 7 MOI 1 +0.6 N.D. +0.8 +0.3 +0.6
phage P. putida Missley MOI 0.1 +0.4 N.D. +0.8 +0.7 +0.6
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