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Fitness for 5 genes in
Pseudomonas putida KT2440
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500 nt
PP_0415 and PP_0416 overlap by 4 nucleotides
PP_0416 and PP_0417 are separated by 69 nucleotides
PP_0417 and PP_0418 are separated by 132 nucleotides
PP_0418 and PP_0420 are separated by 367 nucleotides
PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622
_0415
PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437
_0416
PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988
_0417
PP_0418: PP_0418 - Esterase EstP, at 507,121 to 509,010
_0418
PP_0420: PP_0420 - aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex, at 509,378 to 509,971
_0420
Group
Condition
PP
_0415
PP
_0416
PP
_0417
PP
_0418
PP
_0420
carbon source
Hydroxy-L-Proline (C)
N.D.
-0.1
-6.7
+0.0
-7.1
nitrogen source
nitrite (N)
N.D.
-0.3
-6.1
-0.0
-7.4
carbon source
Phenylacetic (C)
N.D.
-0.3
-6.2
-0.0
-7.1
carbon source
Ferulic Acid (C)
N.D.
-0.1
-6.6
-0.0
-6.8
nitrogen source
nitrite (N)
N.D.
-0.2
-5.6
-0.0
-7.4
carbon source
p-Coumaric (C)
N.D.
+0.1
-6.3
-0.0
-6.9
nitrogen source
nitrogen source Ammonium chloride 20mM
N.D.
+0.2
-6.0
+0.0
-7.2
carbon source
Protocatechuic Acid (C)
N.D.
+0.1
-6.1
+0.0
-6.8
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.3
-5.5
-0.0
-7.0
carbon source
Phenylacetic (C)
N.D.
-0.1
-6.3
+0.1
-6.4
carbon source
Protocatechuic Acid (C)
N.D.
-0.1
-6.2
+0.0
-6.5
carbon source
Vanillic Acid (C)
N.D.
-0.0
-6.1
+0.2
-6.8
carbon source
Protocatechuic Acid (C)
N.D.
+0.2
-5.9
+0.0
-6.9
carbon source
Ferulic Acid (C)
N.D.
-0.2
-5.9
+0.1
-6.6
carbon source
Vanillic Acid (C)
N.D.
+0.3
-6.1
-0.0
-6.6
carbon source
Protocatechuic Acid (C)
N.D.
+0.1
-6.2
+0.0
-6.3
carbon source
p-Coumaric (C)
N.D.
+0.3
-6.3
-0.0
-6.4
nitrogen source
L-Arginine (N)
N.D.
-0.3
-5.6
-0.0
-6.4
nitrogen source
Beta-alanine (N)
N.D.
-0.2
-5.9
-0.0
-6.2
carbon source
benzoic (C)
N.D.
-0.1
-5.5
-0.0
-6.7
nitrogen source
L-Lysine (N)
N.D.
-0.3
-5.4
-0.0
-6.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.4
-6.3
+0.1
-6.4
temperature shift
Temperature shift 30_to_25; with MOPS
N.D.
-0.4
-5.1
+0.0
-6.7
nitrogen source
Beta-alanine (N)
N.D.
-0.1
-5.9
-0.0
-6.1
nitrogen source
Propandiamine (N)
N.D.
+0.1
-5.9
+0.0
-6.3
carbon source
Vanillin (C)
N.D.
-0.0
-6.1
-0.0
-5.7
carbon source
Hydroxy-L-Proline (C)
N.D.
+0.3
-6.6
+0.0
-5.6
carbon source
Vanillin (C)
N.D.
-0.0
-5.6
+0.0
-6.2
carbon source
benzoic (C)
N.D.
+0.3
-5.9
+0.0
-5.8
nitrogen source
Hippuric (N)
N.D.
+0.2
-5.7
+0.2
-6.1
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