Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0413 and PP_0414 are separated by 10 nucleotidesPP_0414 and PP_0415 are separated by 150 nucleotidesPP_0415 and PP_0416 overlap by 4 nucleotidesPP_0416 and PP_0417 are separated by 69 nucleotides PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959 _0413 PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797 _0414 PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622 _0415 PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437 _0416 PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988 _0417
Group Condition PP_0413 PP_0414 PP_0415 PP_0416 PP_0417
carbon source Beta-alanine (C) -4.7 -4.9 N.D. -0.2 -6.4
carbon source Beta-alanine (C) -5.2 -4.8 N.D. +0.3 -6.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.0 -3.2 N.D. -0.5 -3.3
carbon source Delta-Undecalactone (C) -2.5 -2.1 N.D. -0.1 -6.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.7 -3.3 N.D. -0.2 -3.0
carbon source 4-Aminobutyric 10 mM (C) -2.9 -3.7 N.D. +0.1 -3.7
carbon source Delta-Undecalactone (C) -2.3 -1.5 N.D. +0.1 -6.4
carbon source Delta-Decalactone (C) -1.9 -1.4 N.D. -0.4 -5.3
nitrogen source Beta-alanine (N) -1.3 -1.5 N.D. -0.1 -5.9
nitrogen source Beta-alanine (N) -1.4 -1.2 N.D. -0.2 -5.9
carbon source DL-3-Hydroxybutyric (C) -1.1 -1.5 N.D. -0.1 -6.0
carbon source 1,5-Pentanediol (C) -1.1 -1.1 N.D. +0.1 -6.5
carbon source ferulate (C); with MOPS -1.9 -1.8 N.D. -0.4 -4.3
carbon source 4-Hydroxyvalerate (C) (40mM) -1.9 -2.1 N.D. -0.4 -3.9
carbon source ferulate (C); with MOPS -2.5 -1.5 N.D. -0.8 -3.4
carbon source 4-Methyl-2-oxopentanoic (C) -0.7 -0.8 N.D. -0.3 -6.2
carbon source 1,3-Hexanediol (C) -1.0 -0.8 N.D. -0.5 -5.6
carbon source Delta-Dodecalactone (C) -1.4 -1.1 N.D. -0.0 -5.3
carbon source D-Fructose (C) -0.8 -0.8 N.D. -0.1 -6.2
carbon source Delta-Nonalactone (C) -1.9 -0.9 N.D. -0.4 -4.7
carbon source DL-3-Hydroxybutyric (C) -1.1 -0.9 N.D. -0.1 -5.6
carbon source Ferulic Acid (C) -0.6 -0.3 N.D. -0.1 -6.6
carbon source Delta-Decalactone (C) -1.5 -1.1 N.D. -0.6 -4.5
carbon source Delta-Dodecalactone (C) -1.6 -0.6 N.D. -0.1 -5.3
carbon source L-Lysine (C) -0.8 -0.5 N.D. +0.1 -6.3
carbon source 4-Methyl-2-oxopentanoic (C) -0.6 -1.0 N.D. +0.1 -5.8
carbon source D-Fructose (C) -0.9 -0.9 N.D. +0.3 -5.9
nitrogen source DL-3-Aminoisobutyric (N) -1.0 -1.0 N.D. +0.1 -5.4
carbon source L-Lysine (C) -0.6 -1.1 N.D. +0.3 -5.6
carbon source Vanillic Acid (C) -0.5 -0.5 N.D. +0.3 -6.1
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