Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0410 and PP_0411 are separated by 295 nucleotidesPP_0411 and PP_0412 are separated by 40 nucleotidesPP_0412 and PP_0413 are separated by 60 nucleotidesPP_0413 and PP_0414 are separated by 10 nucleotides PP_0410: PP_0410 - DNA-binding response regulator UhpA, at 498,527 to 499,156 _0410 PP_0411: PP_0411 - Polyamine ABC transporter, ATP-binding protein, at 499,452 to 500,576 _0411 PP_0412: PP_0412 - Polyamine ABC transporter, periplasmic polyamine-binding protein, at 500,617 to 501,651 _0412 PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959 _0413 PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797 _0414
Group Condition PP_0410 PP_0411 PP_0412 PP_0413 PP_0414
carbon source Beta-alanine (C) -3.8 -5.3 -5.7 -4.7 -4.9
carbon source Beta-alanine (C) -3.6 -4.1 -3.8 -5.2 -4.8
carbon source 4-Aminobutyric 10 mM (C) -2.9 -4.5 -3.1 -2.9 -3.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.5 -0.1 -5.0 -3.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.5 -0.1 -4.7 -3.3
nitrogen source Beta-alanine (N) -1.4 -1.1 -1.2 -1.3 -1.5
nitrogen source Beta-alanine (N) -1.0 -1.3 -1.3 -1.4 -1.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 -0.2 -3.2 -2.5
carbon source ferulate (C); with MOPS -0.1 -0.4 -0.4 -2.5 -1.5
nitrogen source DL-3-Aminoisobutyric (N) -0.7 -1.2 -0.7 -1.0 -1.0
carbon source 4-Hydroxyvalerate (C) (40mM) -0.3 -0.2 -0.1 -1.9 -2.1
carbon source ferulate (C); with MOPS -0.3 +0.2 -0.6 -1.9 -1.8
carbon source Delta-Undecalactone (C) -0.0 +0.3 +0.2 -2.5 -2.1
carbon source Delta-Undecalactone (C) -0.2 +0.2 +0.2 -2.3 -1.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 +0.8 -2.3 -1.5
nitrogen source DL-3-Aminoisobutyric (N) -0.2 -0.5 -0.7 -0.7 -1.2
phagefrs Time6-FRS -0.1 -1.5 -1.0 -0.5 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.0 -0.1 -2.6 -2.4
carbon source 4-Hydroxyvalerate (C) (40mM) -0.3 +0.3 -0.2 -1.6 -1.2
carbon source ferulate (C); with MOPS +0.5 -0.1 -0.2 -2.3 -0.9
carbon source Delta-Nonalactone (C) -0.2 -0.1 +0.2 -1.9 -0.9
carbon source Delta-Dodecalactone (C) -0.4 -0.1 +0.2 -1.4 -1.1
carbon source Delta-Decalactone (C) -0.0 -0.1 +0.6 -1.9 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.2 +0.4 +0.2 -1.8 -0.8
carbon source L-Lysine 10 mM (C) +0.4 -0.6 +0.2 -1.1 -1.0
pH Valerolactone (C) pH 6.5 -0.3 +0.7 +0.2 -1.0 -1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.2 +0.6 -0.3 -0.9
carbon source L-Leucine (C) +0.4 +1.5 -0.7 +0.5 +1.0
nitrogen source L-Leucine (N) +0.2 +0.7 +1.0 +0.9 +1.0
nitrogen source Propandiamine (N) +1.0 +0.3 +1.3 +0.7 +0.5
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