Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0398 and PP_0399 are separated by 14 nucleotidesPP_0399 and PP_0400 overlap by 1 nucleotidesPP_0400 and PP_0401 are separated by 197 nucleotidesPP_0401 and PP_0402 overlap by 4 nucleotides PP_0398: PP_0398 - Thiosulfate sulfurtransferase GlpE, at 484,721 to 485,053 _0398 PP_0399: PP_0399 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 485,068 to 485,934 _0399 PP_0400: PP_0400 - CO2+/MG2+ efflux protein, at 485,934 to 486,314 _0400 PP_0401: PP_0401 - Ribosomal RNA small subunit methyltransferase A, at 486,512 to 487,315 _0401 PP_0402: PP_0402 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 487,312 to 488,301 _0402
Group Condition PP_0398 PP_0399 PP_0400 PP_0401 PP_0402
stress R2A with Fusaric 480 ug/mL +0.4 N.D. +0.0 -7.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 N.D. -0.4 -5.4 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.4 N.D. +0.1 -5.1 N.D.
carbon source Tween 20 (C) -1.1 N.D. -0.9 -2.8 N.D.
temperature shift Temperature shift 30_to_4 +0.6 N.D. +0.0 -5.4 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.5 N.D. +0.0 -3.7 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.0 N.D. -0.7 -2.3 N.D.
phage P. putida South MOI 10 -0.6 N.D. -0.5 -2.8 N.D.
phage PUT 8 MOI 1 -0.5 N.D. -0.9 -2.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.0 N.D. -0.2 -3.3 N.D.
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.2 N.D. -0.5 -2.8 N.D.
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.1 N.D. -0.3 -2.6 N.D.
carbon source D-Glucose (C) -0.6 N.D. -0.0 -2.3 N.D.
nitrogen source nitrogen source nitrite 1mM -0.3 N.D. -0.5 -2.0 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.2 N.D. -0.2 -2.7 N.D.
temperature shift Temperature shift 30_to_4 +0.5 N.D. -0.2 -3.0 N.D.
carbon source Oleic (C) +0.5 N.D. +0.1 -3.2 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.4 N.D. -0.1 -2.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 N.D. +0.5 -2.9 N.D.
stress Growth with Chloride 500 mM; with MOPS -0.7 N.D. +0.4 -1.9 N.D.
temperature shift Temperature shift 30_to_10 +0.2 N.D. +0.3 -2.5 N.D.
nitrogen source Hydantoin (N) -0.3 N.D. +0.4 -2.2 N.D.
carbon source Lignin Monomers (C) -0.2 N.D. +0.5 -2.2 N.D.
phage P. put PUT 10 MOI 10 +0.7 N.D. -0.5 -2.0 N.D.
carbon source L-Leucine (C) +0.2 N.D. +0.7 -2.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.1 N.D. +0.6 -2.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 N.D. +0.9 -1.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 N.D. +0.8 -1.3 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +1.2 N.D. -0.5 +1.4 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +1.5 N.D. -0.7 +1.4 N.D.
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