Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0383 and PP_0384 are separated by 253 nucleotidesPP_0384 and PP_0385 are separated by 187 nucleotidesPP_0385 and PP_5445 are separated by 343 nucleotidesPP_5445 and PP_t71 are separated by 52 nucleotides PP_0383: PP_0383 - Lysine 2-monooxygenase, at 463,414 to 465,096 _0383 PP_0384: PP_0384 - Transcriptional regulator, AsnC family, at 465,350 to 465,811 _0384 PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 PP_5445: PP_5445 - conserved protein of unknown function, at 466,897 to 467,067 _5445 PP_t71: PP_t71 - tRNA-Met, at 467,120 to 467,196 _t71
Group Condition PP_0383 PP_0384 PP_0385 PP_5445 PP_t71
carbon source L-Lysine (C) -5.5 -5.1 +0.0 -0.5 N.D.
carbon source L-Lysine (C) -5.6 -5.7 +0.1 +0.3 N.D.
nitrogen source L-Lysine (N) -3.3 -3.3 +0.1 -0.4 N.D.
nitrogen source L-Lysine (N) -3.0 -3.0 +0.1 -0.3 N.D.
carbon source L-Lysine (C) -2.0 -3.0 -0.2 -0.5 N.D.
carbon source L-Lysine 10 mM (C) -2.5 -2.5 -0.2 -0.6 N.D.
carbon source ferulate (C); with MOPS -0.4 +0.2 +0.3 -3.2 N.D.
carbon source D-Lysine 10 mM (C) -1.4 -0.9 -0.1 -0.5 N.D.
carbon source D-Lysine 10 mM (C) -1.5 -0.5 -0.0 -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.1 -0.2 -0.3 -2.3 N.D.
nitrogen source 2,6-diaminopimelic (N) -1.6 +0.2 -0.2 -1.1 N.D.
carbon source 3-Hydroxydecanoic (C) +0.2 -0.0 -0.2 -2.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.5 -0.2 -1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -0.4 +0.3 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 -0.2 -0.5 -1.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -0.0 +0.3 -2.1 N.D.
carbon source L-Leucine (C) +0.1 +0.3 -0.1 -1.8 N.D.
carbon source ferulate (C); with MOPS -0.2 +0.3 -1.3 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.3 -0.7 +1.3 N.D.
pH pH 9 +0.2 +0.2 +1.0 -0.9 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.5 +0.4 +0.9 -0.6 N.D.
nitrogen source NAG (N); with MOPS -0.2 +0.1 +0.7 +1.1 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 +1.4 +1.2 -0.1 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +0.4 -0.1 +1.6 N.D.
nitrogen source Propandiamine (N) +0.8 +1.2 +0.2 +0.0 N.D.
nitrogen source NAG (N); with MOPS +0.1 +0.8 +0.3 +1.0 N.D.
nitrogen source Propandiamine (N) +0.8 +0.9 +0.6 +0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 +1.0 +0.9 +0.3 +0.2 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM +0.4 +0.5 +1.1 +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 +1.1 +2.5 N.D.
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