Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0349 and PP_0350 are separated by 56 nucleotidesPP_0350 and PP_0351 are separated by 251 nucleotidesPP_0351 and PP_0352 overlap by 4 nucleotidesPP_0352 and PP_0353 are separated by 147 nucleotides PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309 _0349 PP_0350: PP_0350 - Outer membrane ferrichrome-iron receptor, at 425,366 to 427,798 _0350 PP_0351: PP_0351 - putative Transmembrane sensor protein, at 428,050 to 429,006 _0351 PP_0352: PP_0352 - RNA polymerase sigma-70 factor, ECF subfamily, at 429,003 to 429,521 _0352 PP_0353: PP_0353 - Exonuclease, at 429,669 to 430,379 _0353
Group Condition PP_0349 PP_0350 PP_0351 PP_0352 PP_0353
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.2 -0.0 -0.1 -0.6 -4.6
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.1 +0.0 -0.1 -0.0 -4.4
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 +0.2 -1.8 -0.2 +0.2
stress Geraniol 1 vol% -0.3 -0.2 -0.8 -0.9 +0.1
nitrogen source Propandiamine (N) +0.0 +0.1 -0.5 +0.1 -1.8
carbon source Myristic (C) +0.2 -0.1 -0.3 -1.7 +0.2
nitrogen source D-2-Aminobutyric (N) +0.3 +0.1 -0.3 -0.3 -1.5
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.2 +0.1 -1.8 -0.6 +0.4
pH Growth at pH7 and (C) D-Glucose -0.0 +0.1 -0.3 -1.6 +0.4
carbon source Acetate Carbon Source (5mM) +0.0 -0.2 +0.0 +0.4 -1.6
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.4 +0.0 -1.4 +0.3 +0.1
carbon source ferulate (C); with MOPS -0.2 +0.0 +0.5 -1.4 -0.0
nitrogen source D-2-Aminobutyric (N) +0.4 +0.0 +0.3 -1.2 -0.5
stress R2A with Fusaric 480 ug/mL +0.4 -0.2 -0.7 -0.5 +0.3
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 -0.3 -0.2 +1.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.2 +0.2 +1.1 -0.6
carbon source butyrate (C) +0.2 +0.2 -0.1 -0.5 +1.2
nitrogen source 2,6-diaminopimelic (N) -0.3 -0.1 +0.2 +1.3 +0.1
carbon source Levulinic Acid (C) -0.1 +0.1 -0.2 -0.0 +1.7
carbon source 4-Hydroxyvalerate (C) (40mM) -0.1 +0.1 -0.2 +0.6 +1.2
carbon source Levulinic Acid (C) -0.0 +0.1 -0.4 +0.4 +1.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.2 +0.1 +0.8 +1.0
carbon source 4-Hydroxyvalerate (C) (40mM) +0.0 +0.1 -0.4 +0.7 +1.5
carbon source acetate (C) +0.4 -0.3 +0.5 +1.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.4 -0.4 +0.6 +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.2 +0.4 +0.6 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.2 +1.3 +0.8 +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.0 -0.1 +4.8 +0.4 +0.8
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -0.1 +5.2 +0.2 +0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 -0.0 +5.4 +0.8 +0.8
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