Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotidesPP_0319 and PP_0320 are separated by 182 nucleotidesPP_0320 and PP_0321 are separated by 34 nucleotides PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319 PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320 PP_0321: PP_0321 - low specificity L-threonine aldolase, at 385,495 to 386,535 _0321
Group Condition PP_0317 PP_0318 PP_0319 PP_0320 PP_0321
carbon source carbon source D-Glucose 55.5 mM +0.2 N.D. -3.5 +0.1 -0.0
carbon source Valerolactone (C) +0.1 N.D. -2.6 +0.2 -0.9
nitrogen source L-Threonine (N) +0.2 N.D. +0.3 +0.3 -3.8
carbon source Mucic (C) -0.0 N.D. -2.6 -0.3 +0.0
carbon source Glutaric (C) +0.1 N.D. -2.6 -0.2 -0.1
nitrogen source L-Threonine (N) +0.3 N.D. +0.3 +0.3 -3.5
phage P. putida PUT 7 MOI 1 -0.2 N.D. -1.5 -0.5 -0.5
stress R2A with Fusaric 480 ug/mL +0.0 N.D. -2.8 -0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. -2.3 +0.0 -0.4
nitrogen source D-2-Aminobutyric (N) +0.4 N.D. -2.7 -0.2 +0.3
nitrogen source nitrate (N) -0.4 N.D. -1.1 -0.1 -0.5
carbon source Valerolactam 10 mM (C) -0.2 N.D. -1.8 +0.1 +0.0
phage P. putida Sci Big MOI 0.1 -0.4 N.D. -1.4 -0.2 +0.1
nitrogen source nitrogen source nitrite 0.5mM +0.1 N.D. -2.0 -0.0 +0.1
temperature shift Temperature shift 30_to_34; with MOPS -0.2 N.D. -1.6 +0.1 -0.1
nitrogen source Caprolactam (N) -0.0 N.D. -1.6 -0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. -1.9 +0.1 +0.4
carbon source Lignin Monomers (C) +0.0 N.D. -1.7 +0.2 +0.2
pH pH 9 +0.4 N.D. -1.6 +0.3 +0.0
carbon source Valeric (C) -0.1 N.D. -1.2 -0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 N.D. +1.3 +0.4 -0.9
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.3 N.D. +1.7 -0.2 -0.5
no stress control Growth with no stress -0.2 N.D. +1.6 -0.1 -0.4
temperature Growth at 30C; with MOPS -0.0 N.D. +1.5 +0.1 -0.6
nitrogen source nitrate (N) +0.2 N.D. +1.3 +0.2 -0.3
carbon source ferulate (C); with MOPS -0.2 N.D. +1.3 +0.4 +0.4
carbon source Valerolactone (C) +0.3 N.D. +1.5 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 N.D. +1.5 -0.1 +0.1
nitrogen source NAG (N); with MOPS +0.1 N.D. +1.9 -0.2 +0.1
temperature shift Temperature shift 30_to_25 +0.2 N.D. +1.4 +0.1 +0.5
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