Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0316 and PP_0317 are separated by 108 nucleotidesPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotidesPP_0319 and PP_0320 are separated by 182 nucleotides PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810 _0316 PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319 PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320
Group Condition PP_0316 PP_0317 PP_0318 PP_0319 PP_0320
nitrogen source Carnitine Hydrochloride (N) -2.9 +0.1 N.D. -0.7 -0.0
carbon source carbon source D-Glucose 55.5 mM -0.2 +0.2 N.D. -3.5 +0.1
nitrogen source Carnitine Hydrochloride (N) -3.1 +0.1 N.D. -0.4 +0.0
nitrogen source Choline chloride (N) -1.7 -0.0 N.D. -1.1 -0.1
carbon source Glutaric (C) -0.2 +0.1 N.D. -2.6 -0.2
carbon source Mucic (C) +0.1 -0.0 N.D. -2.6 -0.3
stress R2A with Fusaric 480 ug/mL +0.1 +0.0 N.D. -2.8 -0.1
nitrogen source D-2-Aminobutyric (N) +0.1 +0.4 N.D. -2.7 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.3 N.D. -2.3 +0.0
carbon source Valerolactone (C) -0.0 +0.1 N.D. -2.6 +0.2
phage P. putida PUT 7 MOI 1 -0.2 -0.2 N.D. -1.5 -0.5
nitrogen source Choline chloride (N) -1.8 -0.0 N.D. -0.4 +0.0
carbon source Valeric (C) -0.6 -0.1 N.D. -1.2 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 +0.1 N.D. -2.0 -0.0
phage P. putida Sci Big MOI 0.1 +0.1 -0.4 N.D. -1.4 -0.2
carbon source Valerolactam 10 mM (C) +0.3 -0.2 N.D. -1.8 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.3 N.D. -1.4 -0.1
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4 -0.0 N.D. -1.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.1 N.D. -1.9 +0.1
carbon source Delta-Undecalactone (C) +0.3 +0.1 N.D. -1.7 -0.0
carbon source Lignin Monomers (C) +0.1 +0.0 N.D. -1.7 +0.2
temperature shift Temperature shift 30_to_34; with MOPS +0.3 -0.2 N.D. -1.6 +0.1
pH pH 9 +0.0 +0.4 N.D. -1.6 +0.3
temperature Growth at 30C; with MOPS -0.8 -0.0 N.D. +1.5 +0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.1 -0.3 N.D. +1.7 -0.2
no stress control Growth with no stress +0.2 -0.2 N.D. +1.6 -0.1
carbon source Valerolactone (C) -0.1 +0.3 N.D. +1.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 +0.4 N.D. +1.5 -0.1
carbon source ferulate (C); with MOPS +0.4 -0.2 N.D. +1.3 +0.4
nitrogen source NAG (N); with MOPS +0.1 +0.1 N.D. +1.9 -0.2
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