Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0315 and PP_0316 are separated by 289 nucleotidesPP_0316 and PP_0317 are separated by 108 nucleotidesPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotides PP_0315: PP_0315 - putative glycine-betaine dioxygenase subunit, at 378,122 to 379,414 _0315 PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810 _0316 PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319
Group Condition PP_0315 PP_0316 PP_0317 PP_0318 PP_0319
nitrogen source Carnitine Hydrochloride (N) -3.2 -3.1 +0.1 N.D. -0.4
nitrogen source Carnitine Hydrochloride (N) -2.9 -2.9 +0.1 N.D. -0.7
nitrogen source Choline chloride (N) -1.8 -1.7 -0.0 N.D. -1.1
nitrogen source Choline chloride (N) -1.9 -1.8 -0.0 N.D. -0.4
carbon source carbon source D-Glucose 55.5 mM +0.0 -0.2 +0.2 N.D. -3.5
stress R2A with Fusaric 480 ug/mL -0.3 +0.1 +0.0 N.D. -2.8
carbon source Glutaric (C) -0.0 -0.2 +0.1 N.D. -2.6
carbon source Valerolactone (C) -0.1 -0.0 +0.1 N.D. -2.6
carbon source Mucic (C) -0.1 +0.1 -0.0 N.D. -2.6
nitrogen source Betaine (N) -1.2 -0.9 +0.1 N.D. -0.4
phage P. putida PUT 7 MOI 1 -0.6 -0.2 -0.2 N.D. -1.5
phage P. putida Sci Big MOI 0.1 -0.6 +0.1 -0.4 N.D. -1.4
carbon source Cholinium lysinate (C) -0.9 -1.2 -0.0 N.D. -0.2
carbon source Valerolactam 10 mM (C) -0.4 +0.3 -0.2 N.D. -1.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 +0.3 N.D. -2.3
nitrogen source Betaine (N) -1.1 -1.1 -0.1 N.D. +0.1
nitrogen source D-2-Aminobutyric (N) +0.5 +0.1 +0.4 N.D. -2.7
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.1 +0.1 N.D. -2.0
temperature shift Temperature shift 30_to_34; with MOPS -0.1 +0.3 -0.2 N.D. -1.6
nitrogen source Cytosine (N) -0.2 +0.2 +0.1 N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.3 +0.1 N.D. -1.9
pH Growth at pH6 and (C) Trisodium citrate -0.3 +0.4 -0.5 N.D. -1.1
carbon source Delta-Undecalactone (C) +0.0 +0.3 +0.1 N.D. -1.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.4 +0.0 N.D. -1.2
temperature Growth at 30C; with MOPS +0.1 -0.8 -0.0 N.D. +1.5
nitrogen source Urea (N); with MOPS -0.4 +0.4 +0.3 N.D. +1.2
no stress control Growth with no stress -0.0 +0.2 -0.2 N.D. +1.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.2 +0.1 -0.3 N.D. +1.7
nitrogen source NAG (N); with MOPS -0.1 +0.1 +0.1 N.D. +1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -0.0 +0.4 N.D. +1.5
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