Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0309 and PP_0310 are separated by 15 nucleotidesPP_0310 and PP_0311 are separated by 178 nucleotidesPP_0311 and PP_0312 overlap by 1 nucleotidesPP_0312 and PP_0313 are separated by 10 nucleotides PP_0309: PP_0309 - conserved protein of unknown function, at 369,974 to 370,504 _0309 PP_0310: PP_0310 - putative dimethylglycine dehydrogenase subunit, at 370,520 to 372,580 _0310 PP_0311: PP_0311 - putative dimethylglycine dehydrogenase subunit, at 372,759 to 374,711 _0311 PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943 _0312 PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724 _0313
Group Condition PP_0309 PP_0310 PP_0311 PP_0312 PP_0313
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -4.0 -5.0 -4.4 -6.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -3.6 -4.9 -4.5 -6.4
nitrogen source Carnitine Hydrochloride (N) -3.0 -3.7 -3.1 -3.5 -3.3
nitrogen source Carnitine Hydrochloride (N) -2.5 -3.3 -3.2 -3.6 -3.6
carbon source Cholinium lysinate (C) -3.1 -3.2 -3.2 -3.5 -2.8
nitrogen source Choline chloride (N) -2.3 -2.0 -2.4 -2.3 -2.9
nitrogen source Betaine (N) -1.9 -2.0 -2.2 -1.7 -4.0
nitrogen source Choline chloride (N) -2.1 -2.1 -2.3 -2.1 -2.7
nitrogen source D-2-Aminobutyric (N) -0.3 -2.5 -2.9 -2.6 -2.7
nitrogen source D-2-Aminobutyric (N) -0.4 -2.4 -1.6 -3.4 -2.7
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4 -2.2 -1.9 -2.3 -3.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.2 -2.3 -2.7 -2.5
nitrogen source Betaine (N) -1.8 -2.2 -2.1 -1.7 -1.6
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.8 -1.2 -0.9 -1.2 -1.6
micoeukaryotes C.elegans, mixed culture-2 -0.4 -1.8 -1.4 -1.0 -1.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.2 -0.6 -1.2 -1.9
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.4 -0.4 -0.5 -1.1 -2.8
micoeukaryotes C.elegans, mixed culture-1 -0.5 -1.2 -1.5 -1.3 -0.6
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 -0.8 -0.9 -1.0 -1.8
carbon source butyrate (C) -0.5 -0.6 -0.8 -0.9 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -0.0 -2.1 -0.8 -1.3
carbon source butyrate (C) -0.5 -0.8 -0.7 -0.8 -1.1
carbon source DL-2-Aminoadipic 10 mM (C) -0.5 -0.9 -0.8 -0.6 -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.8 -1.7 -1.3 +1.4
carbon source Butyl stearate (C) -0.5 -0.9 -0.7 -0.9 -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.6 -0.1 -0.9 -1.6
carbon source L-Lysine 10 mM (C) -0.2 -0.7 -0.9 -0.5 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.6 -0.7 -0.5 -1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.0 -0.5 -0.3 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.9 -0.7 -1.0 -0.4
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