Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0300	PP_0301	PP_0302	PP_0303	PP_0304
nitrogen source	Carnitine Hydrochloride (N)	+0.1	-3.4	-2.9	-3.4	-2.8
nitrogen source	Carnitine Hydrochloride (N)	+0.0	-2.6	-2.9	-2.8	-2.8
nitrogen source	NAG (N); with MOPS	-0.0	-0.5	-0.3	-2.4	-0.5
carbon source	Valeric (C)	+0.2	-1.3	+0.0	-1.1	-0.1
temperature shift	Temperature shift 30_to_25; with MOPS	+0.0	-0.5	-0.3	-0.7	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	+0.1	-0.5	-1.7	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.0	-0.5	-0.6	-1.0	+0.2
pH	Growth at pH6 and (C) D-Glucose	+0.3	-1.2	+0.2	-0.5	-0.6
carbon source	Valerolactone (C)	+0.4	-0.2	-0.3	-1.5	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-0.6	+0.2	-0.6	-0.4
phage	P. putida Sci small MOI 0.1	-0.1	-0.1	+0.3	-1.4	+0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	+0.1	-0.2	+0.1	-1.2	+0.2
pH	Growth at pH6 and (C) D-Glucose	+0.1	-0.0	+0.4	-1.1	-0.4
temperature shift	Temperature shift 10_to_30	+0.1	-0.4	+0.3	-0.7	-0.3
pH	Valerolactone (C) pH 6.5	-0.3	+0.5	+0.2	-1.0	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.1	+0.7	+0.0	-1.4	-0.1
nitrogen source	Propiolactam (N)	+0.3	-0.5	+0.4	-1.0	+0.3
carbon source	ferulate (C); with MOPS	+0.1	-0.2	+0.3	-0.8	+0.3
carbon source	ferulate (C); with MOPS	+0.1	+0.2	+0.0	-1.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.9	+0.4	-0.5	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.3	-0.1	+0.8	-0.5
pH	pH 6	+0.3	+0.5	+0.1	-0.5	+0.3
nitrogen source	nitrate (N)	-0.2	+0.5	+0.4	-0.6	+0.6
nitrogen source	D-2-Aminobutyric (N)	-0.2	-0.2	-0.1	+0.8	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.0	-0.3	+0.2	+0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.3	-0.3	+0.5
pH	pH 8	+0.2	+0.4	+0.4	+0.5	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.0	+1.0	+0.2	+0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.1	+0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.1	+0.0	+0.8	+0.5