Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_0278	PP_0279	PP_0280	PP_0281	PP_0282
pH	Growth at pH7 and (C) D-Glucose	-1.7	-0.5	-0.7	-0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9	-0.3	-0.7	-0.7	-0.1
stress	Geraniol 1 vol%	-0.2	-0.2	-0.7	-0.7	-1.0
carbon source	Trisodium citrate (C)	-0.8	-0.3	-1.5	+0.3	+0.1
nitrogen source	L-Ornithine (N)	-0.1	-0.2	-0.5	-0.9	-0.6
nitrogen source	L-Ornithine (N)	-0.2	-0.1	-0.6	-0.9	-0.4
phage moi 100	Time6-phageFRS	-0.4	-0.2	-0.3	-0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.1	-0.4	-0.1	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.0	-0.6	-0.5	+0.2	-0.1
stress	R2A with Fusaric 480 ug/mL	-0.8	-0.3	+0.2	+0.1	-1.2
carbon source	3-methyl-1-butanol (C)	+0.1	+0.3	-0.8	-0.8	-0.8
stress	R2A with Fusaric 480 ug/mL	-0.1	-0.1	-0.4	+0.3	-1.4
stress	R2A with Fusaric 480 ug/mL	-0.5	+0.1	+0.1	+0.1	-1.5
nitrogen source	Hippuric (N)	+0.4	-0.3	-0.5	-0.7	-0.5
carbon source	1,3-Butandiol (C)	-0.5	-0.4	+0.2	-0.7	+0.3
carbon source	carbon source Bisabolene 48.9 mM	-0.9	-0.5	+0.6	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+1.1	-0.1	-0.0	-0.8	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.4	-0.4	+0.7	-0.7	+0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.8	-0.3	+0.4	+0.5	-0.4
carbon source	carbon source D-Glucose 55.5 mM	-0.3	-0.9	+0.1	+0.5	+0.3
stress	Growth with Chloride 500 mM; with MOPS	-1.1	+0.4	+0.0	+0.6	+0.2
pH	pH 9	-1.1	-0.2	+0.5	+0.3	+0.6
carbon source	ferulate (C); with MOPS	-0.3	+0.9	-0.3	+0.5	-0.3
nitrogen source	D-2-Aminobutyric (N)	+1.0	-0.4	+0.4	-0.2	+0.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.1	-0.3	+0.6	+0.7	+0.5
carbon source	L-Lysine (C)	-0.3	-0.3	+0.6	+0.7	+1.0
carbon source	L-Lysine 10 mM (C)	+0.1	-0.2	+0.8	+0.8	+0.7
micoeukaryotes	C.elegans, mixed culture-2	+0.5	+0.0	+0.7	+0.3	+0.6
nitrogen source	Propandiamine (N)	+0.0	+0.4	+1.1	+0.8	+0.9
nitrogen source	Propandiamine (N)	+0.1	+0.3	+1.0	+0.9	+1.5