Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_0269	PP_0270	PP_0271	PP_0272	PP_0273
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	+0.1	+0.1	-0.0	-0.2	-2.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.8	-0.5	+0.7	-0.2	-0.9
stress	Growth with Chloride 200 mM	-0.6	-0.3	+0.0	-0.3	-1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.1	-0.7	+0.1	-1.7
nitrogen source	NAG (N); with MOPS	+0.4	-0.2	+0.3	+0.2	-2.4
nitrogen source	Urea (N); with MOPS	-0.3	+0.1	+0.1	-0.1	-1.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.2	-0.3	+0.1	-0.2	-1.4
nitrogen source	nitrogen source nitrite 1mM	-0.1	+0.3	-0.2	+0.2	-1.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-0.2	+0.2	-0.0	-1.0
temperature shift	Temperature shift 30_to_21; with MOPS	-0.7	-0.4	-0.5	-0.1	+0.3
stress	R2A with Fusaric 240 ug/mL	+0.4	-0.0	-0.4	-0.2	-0.8
nitrogen source	Urea (N)	-0.0	+0.6	-0.4	-0.2	-0.9
pH	Growth at pH9 and (C) Trisodium citrate	-0.3	+0.0	+0.5	+0.1	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.0	+0.5	-0.3	-1.1
nitrogen source	nitrogen source nitrite 1mM	+0.0	+0.3	+0.3	-0.2	-1.1
phage	P. putida PUT 7 MOI 1	+0.6	+0.1	-0.5	-0.1	-0.7
carbon source	butyrate (C)	-0.6	-0.3	-0.5	+0.2	+0.7
temperature	Growth at 30C	+0.1	+0.3	+0.3	-0.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.2	+0.1	+0.0	-1.3
pH	Growth at pH6 and (C) D-Glucose	-0.6	+0.5	-0.4	+0.2	+0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.3	+0.1	+0.2	+0.3	-0.9
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.4	-0.5	+0.3	-0.1	+0.9
pH	pH 7	-0.6	-0.2	+0.1	+0.1	+0.9
nitrogen source	NAG (N); with MOPS	-0.5	+0.7	+0.5	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.5	+0.5	+0.4	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.5	-0.5	+0.3	+1.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.1	-0.3	+0.0	-0.1	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	-0.5	+0.1	+1.1
pH	pH 8	+0.1	-0.1	-0.0	+0.0	+1.7
nitrogen source	D-2-Aminobutyric (N)	+0.8	-0.2	+0.3	+0.1	+0.7