Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0265 and PP_0266 are separated by 277 nucleotidesPP_0266 and PP_0267 are separated by 457 nucleotidesPP_0267 and PP_0268 are separated by 474 nucleotidesPP_0268 and PP_0269 are separated by 30 nucleotides PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329 _0265 PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713 _0266 PP_0267: PP_0267 - putative Outer membrane ferric siderophore receptor, at 322,171 to 324,240 _0267 PP_0268: PP_0268 - outer-membrane porin D, at 324,715 to 326,034 _0268 PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732 _0269
Group Condition PP_0265 PP_0266 PP_0267 PP_0268 PP_0269
nitrogen source Propandiamine (N) -0.2 -5.3 -0.1 +0.2 -0.4
nitrogen source Propandiamine (N) -0.0 -5.1 -0.1 +0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -0.6 +0.0 +0.1 -1.8
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.4 -2.0 +0.2 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -0.6 +0.1 -0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.0 +0.1 +0.0 -0.4
carbon source DL-3-Hydroxyisobutyric (C) -0.6 -0.3 -0.2 -0.2 -0.3
pH D-Glucose (C) pH 6.5 -1.3 -0.0 -0.1 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 -0.9 -0.1 -0.2 -0.3
carbon source ferulate (C); with MOPS -0.3 -0.3 +0.1 -0.2 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.9 +0.0 -0.1 -0.5
carbon source butyrate (C) -0.2 +0.2 -0.1 -0.6 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 -0.4 -0.1 +0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -1.4 +0.1 +0.2 +0.3
carbon source Nonanoic (C) -1.0 +0.1 -0.2 -0.0 +0.3
pH Growth at pH6 and (C) D-Glucose -0.4 +0.3 +0.1 -0.2 -0.6
supernatant LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter -0.1 -0.9 +0.1 -0.2 +0.4
nitrogen source Urea (N); with MOPS +0.5 -0.8 -0.1 +0.1 -0.3
nitrogen source Urea (N) -0.1 -1.1 +0.2 +0.1 +0.3
phage PUT8 MOI 0.1 -0.4 +0.3 +0.1 +0.1 -0.8
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.3 -0.4 +0.2 -0.3 +0.5
carbon source Decanoic (C) +0.3 -1.1 -0.2 +0.4 +0.3
nitrogen source NAG (N); with MOPS +0.3 -0.7 +0.3 -0.4 +0.4
carbon source Delta-Nonalactone (C) +0.1 -0.7 -0.2 +0.3 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.5 +0.2 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.3 +0.1 +0.2 +1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 +0.4 +0.5 +0.1 +0.2
nitrogen source D-2-Aminobutyric (N) -1.4 +0.8 +0.2 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 -0.5 +0.1 +0.1 +0.5
nitrogen source D-2-Aminobutyric (N) +1.0 +1.1 +0.1 -0.3 +0.8
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