Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0262 and PP_0263 overlap by 1 nucleotidesPP_0263 and PP_0264 overlap by 4 nucleotidesPP_0264 and PP_0265 are separated by 42 nucleotidesPP_0265 and PP_0266 are separated by 277 nucleotides PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524 _0262 PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930 _0263 PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741 _0264 PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329 _0265 PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713 _0266
Group Condition PP_0262 PP_0263 PP_0264 PP_0265 PP_0266
nitrogen source Propandiamine (N) -0.0 -0.2 -0.1 -0.2 -5.3
nitrogen source Propandiamine (N) -0.5 -0.0 +0.5 -0.0 -5.1
carbon source Succinic Acid (C) -0.1 -2.9 -1.6 -0.4 +0.0
carbon source succinate (C) -0.5 -1.8 -1.1 -0.4 -0.1
carbon source Succinic Acid (C) -0.1 -2.2 -1.1 -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 +0.1 +0.1 -1.1 -0.6
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.4 -0.4 -0.4 -0.4 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1 -0.4 -0.2 -0.5 -0.4
pH pH 4 -1.0 -0.2 -0.0 -0.7 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -0.2 +0.3 -0.5 -0.3
carbon source Nonanoic (C) -0.6 -0.1 -0.3 -1.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -0.1 +0.2 -0.3 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -0.0 -0.3 -0.2 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 +0.3 -0.1 -0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 +0.3 -0.7 -1.0
nitrogen source D-2-Aminobutyric (N) -0.4 +0.0 +0.4 -1.4 +0.8
nitrogen source DL-2-Aminobutyric (N) -1.2 -0.1 -0.0 -0.2 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.8 -0.2 -0.3 -0.3 -0.4
carbon source Rhamnogalacturonan - from potato (C) +0.8 +0.0 -0.5 -0.8 +0.0
carbon source ferulate (C); with MOPS -1.1 +0.2 +0.1 +0.3 +0.3
carbon source D-Glucose (C); with MOPS -1.3 +0.2 +0.1 +0.5 +0.3
nitrogen source DL-2-Aminobutyric (N) -1.0 -0.0 -0.0 -0.0 +1.0
phage PUT 8 MOI 1 -1.3 +0.4 -0.1 +0.2 +0.8
carbon source acetate (C) +0.8 -0.7 +0.2 +0.2 -0.4
nitrogen source NAG (N); with MOPS -0.3 +0.4 +0.5 +0.3 -0.7
carbon source Delta-Nonalactone (C) -0.8 +0.8 +0.9 +0.1 -0.7
nitrogen source 2,6-diaminopimelic (N) +0.2 +0.3 +0.8 -0.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.1 +0.7 -0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.1 +1.1 +0.3 +0.4
nitrogen source D-2-Aminobutyric (N) +1.1 +0.3 -0.0 +1.0 +1.1
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