Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0252 and PP_0254 are separated by 1868 nucleotidesPP_0254 and PP_0255 are separated by 56 nucleotidesPP_0255 and PP_0256 are separated by 196 nucleotidesPP_0256 and PP_0257 are separated by 5 nucleotides PP_0252: PP_0252 - 33 kDa chaperonin, at 306,086 to 306,985 _0252 PP_0254: PP_0254 - conserved protein of unknown function, at 308,854 to 309,294 _0254 PP_0255: PP_0255 - conserved exported protein of unknown function, at 309,351 to 309,833 _0255 PP_0256: PP_0256 - putative oxidoreductase, at 310,030 to 312,375 _0256 PP_0257: PP_0257 - protein sulfur transferase, at 312,381 to 313,211 _0257
Group Condition PP_0252 PP_0254 PP_0255 PP_0256 PP_0257
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. -2.4 +0.4 +0.0 -0.2
nitrogen source Urea (N) N.D. -2.2 -0.1 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. -1.5 +0.4 +0.0 -0.9
carbon source Delta-Decalactone (C) N.D. -1.5 +0.3 -0.1 -0.7
carbon source Delta-Nonalactone (C) N.D. -0.2 +0.0 -0.1 -1.7
phage P. putida Sci small MOI 0.1 N.D. -0.5 -0.0 -0.2 -1.2
pH Growth at pH7 and (C) Trisodium citrate N.D. -0.5 -0.6 -0.4 -0.4
nitrogen source NAG (N); with MOPS N.D. -0.7 -0.2 -0.2 -0.8
phage P. putida Sci Big MOI 0.1 N.D. -0.2 -0.3 -0.3 -0.9
carbon source ferulate (C); with MOPS N.D. -1.2 +0.1 -0.0 -0.7
phage P. putida Sci small MOI 0.1 N.D. -0.6 -0.0 -0.5 -0.5
nitrogen source no extra (N); with MOPS N.D. -1.7 -0.0 +0.4 -0.2
nitrogen source Ammonium chloride (N) N.D. -1.1 -0.2 -0.4 +0.3
carbon source ferulate (C); with MOPS N.D. -0.7 -0.2 +0.4 -0.6
carbon source Trisodium citrate (C) N.D. -0.9 +0.2 +0.2 -0.6
carbon source Nonanoic (C) N.D. -1.0 -0.1 +0.4 -0.3
phage P. putida South MOI 10 N.D. -1.1 -0.3 +0.1 +0.3
nitrogen source nitrogen source nitrite 1mM N.D. -1.2 -0.2 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -0.1 +0.7 -1.3
pH Growth at pH7 and (C) Trisodium citrate N.D. -1.0 -0.4 +0.4 +0.3
nitrogen source D-2-Aminobutyric (N) N.D. -1.8 -0.1 +0.3 +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 +0.1 -0.1 -1.2
temperature shift Temperature shift 30_to_21; with MOPS N.D. +0.4 +0.2 +0.3 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +1.0 -0.3 +0.1 -0.7
carbon source Acetate Carbon Source (20mM) N.D. +1.1 -0.3 -0.1 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 +0.4 +0.5 -0.8
pH Growth at pH6 and (C) D-Glucose N.D. -0.3 -0.2 +0.3 +0.9
carbon source Tween 20 (C) N.D. +1.0 -0.6 +0.2 +0.4
phage PUT 8 MOI 1 N.D. +1.0 -0.3 -0.0 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 -0.3 +0.2 +0.4
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