Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0229 and PP_0230 are separated by 62 nucleotidesPP_0230 and PP_0231 are separated by 48 nucleotidesPP_0231 and PP_0232 overlap by 4 nucleotidesPP_0232 and PP_0233 are separated by 13 nucleotides PP_0229: PP_0229 - choline/carnitine/betaine transporter, at 282,550 to 284,553 _0229 PP_0230: PP_0230 - alpha-ketoglutarate-dependent sulfonate dioxygenase, at 284,616 to 285,449 _0230 PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337 _0231 PP_0232: PP_0232 - ATP-binding taurine transporter subunit, at 286,334 to 287,122 _0232 PP_0233: PP_0233 - taurine ABC transporter periplasmic binding subunit, at 287,136 to 288,107 _0233
Group Condition PP_0229 PP_0230 PP_0231 PP_0232 PP_0233
carbon source D-Glucose (C) -0.2 N.D. -0.2 -5.4 -0.4
pH Growth at pH7 and (C) D-Glucose -0.0 N.D. -0.4 -5.4 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.1 N.D. -0.1 -5.6 -0.1
carbon source Trisodium citrate (C) -0.3 N.D. +0.0 -5.4 +0.0
pH Growth at pH6 and (C) Trisodium citrate +0.2 N.D. -0.2 -5.2 -0.1
carbon source ferulate (C); with MOPS -0.3 N.D. -1.1 -3.4 -0.2
pH D-Glucose (C) pH 6 -0.1 N.D. -0.2 -3.7 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 N.D. -0.5 -3.2 -0.4
temperature Growth at 30C; with MOPS -0.1 N.D. -0.1 -3.9 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. +0.2 -3.6 -0.3
carbon source L-Phenylalanine 5 mM (C) -0.1 N.D. +0.2 -4.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 N.D. -0.4 -2.9 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 N.D. -0.3 -3.1 -0.1
carbon source DL-3-Hydroxyisobutyric (C) -0.1 N.D. -0.6 -1.9 -0.3
carbon source Glucose (C) (20mM) +0.0 N.D. -0.2 -2.6 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.1 N.D. -0.6 -2.3 -0.0
carbon source carbon source D-Glucose 55.5 mM +0.0 N.D. -0.1 -2.4 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.0 N.D. +0.1 -2.6 -0.1
carbon source 2-methyl-1-butanol (C) -0.0 N.D. -0.0 -2.6 +0.0
carbon source acetate (C) -0.1 N.D. -0.0 -2.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. -0.0 -2.0 -0.3
nitrogen source D-2-Aminobutyric (N) +0.2 N.D. +0.6 -3.4 +0.2
temperature shift Temperature shift 10_to_21; with MOPS -0.1 N.D. -0.4 -2.2 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.1 N.D. -0.4 -1.5 -0.5
temperature shift Temperature shift 10_to_30 +0.2 N.D. -0.1 -2.1 -0.0
nitrogen source 2,6-diaminopimelic (N) -0.1 N.D. -0.2 -2.2 +0.8
temperature shift Temperature shift 30_to_21; with MOPS -0.2 N.D. +0.4 -2.0 +0.2
nitrogen source Urea (N) -0.3 N.D. +0.6 +1.1 -0.5
phage P. putida Sci small MOI 0.1 -0.3 N.D. -0.3 +1.4 +0.5
carbon source 2-Methylbutanoic (C) -0.1 N.D. -0.3 +2.1 -0.2
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