Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0216 and PP_0217 are separated by 99 nucleotidesPP_0217 and PP_0218 are separated by 146 nucleotidesPP_0218 and PP_0219 are separated by 28 nucleotidesPP_0219 and PP_0220 overlap by 11 nucleotides PP_0216: PP_0216 - putative sensory box/GGDEF family protein, at 267,641 to 268,669 _0216 PP_0217: PP_0217 - delta-9 fatty acid desaturase, at 268,769 to 269,953 _0217 PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995 _0218 PP_0219: PP_0219 - L,D-methionine D-methionine ABC transporter - permease subunit, at 272,024 to 272,668 _0219 PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767 _0220
Group Condition PP_0216 PP_0217 PP_0218 PP_0219 PP_0220
stress Isobutyl alcohol 0.6 vol% -0.0 -0.4 -3.4 -0.1 -0.5
biofilm mediium pdms biofilm mediium PDMS; 7 hours -0.1 -0.1 -3.7 -0.1 -0.2
phage P. putida PUT 7 MOI 1 -0.6 -0.7 -1.9 -0.1 -0.7
stress 3-methyl-1-butanol 0.4 vol% +0.0 -0.6 -2.9 +0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.0 -0.1 -2.3 -0.5 -0.6
phage P. putida Missley MOI 0.1 -0.4 -1.3 -0.6 -0.7 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 -0.1 -3.3 +0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -0.2 -3.0 -0.2 +0.1
nitrogen source 2,6-diaminopimelic (N) -0.2 -0.6 -0.3 -0.0 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.5 -2.6 -0.1 +0.5
biofilm mediium pdms biofilm mediium PDMS; 7 hours -0.0 -0.4 -2.4 -0.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.0 -3.4 -0.1 +0.6
biofilm mediium pdms biofilm mediium PDMS; 7 hours +0.0 -0.4 -2.7 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.0 -0.3 -2.5 -0.1 -0.0
stress Butanol 0.6 vol% -0.1 -0.6 -2.3 -0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.0 -2.3 -0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.0 -0.4 -2.3 +0.1 -0.2
stress 1-Pentanol 0.3 vol% -0.2 -0.3 -1.6 -0.2 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 -0.1 -2.1 +0.3 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 -0.5 -1.8 +0.0 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 -0.5 -2.3 -0.3 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.1 -0.4 -2.5 +0.1 +0.1
carbon source Crotonic (C) -0.2 +0.6 -1.0 -0.4 -1.6
carbon source carbon source 4-vinylphenol 0.01 mM -0.1 +0.3 +0.2 -0.0 -2.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.2 -2.6 +0.1 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -0.4 -1.8 +0.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.8 -1.5 +0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.0 -1.2 +0.4 -0.3
nitrogen source D-2-Aminobutyric (N) +0.2 +0.6 +1.5 -0.4 -0.3
stress Geraniol 1 vol% +0.3 +0.7 +2.4 -0.1 -0.1
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