Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0209 and PP_0210 overlap by 4 nucleotidesPP_0210 and PP_0211 overlap by 1 nucleotidesPP_0211 and PP_0213 are separated by 484 nucleotidesPP_0213 and PP_0214 are separated by 182 nucleotides PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213 PP_0214: PP_0214 - 4-aminobutyrate aminotransferase, at 264,875 to 266,152 _0214
Group Condition PP_0209 PP_0210 PP_0211 PP_0213 PP_0214
nitrogen source Propandiamine (N) +0.3 +0.1 +0.6 -5.9 -3.3
carbon source L-Lysine (C) -0.3 +0.0 -0.1 -2.9 -4.2
nitrogen source Propandiamine (N) +0.3 +0.6 +0.5 -5.0 -3.7
carbon source L-Lysine (C) +0.2 +0.2 -0.3 -3.6 -3.5
carbon source Valerolactam 10 mM (C) +0.4 +0.1 +0.3 -4.2 -3.5
carbon source 5-Aminovaleric 10 mM (C) +0.4 +0.3 -0.1 -4.0 -3.4
nitrogen source 5-Aminovaleric (N) -0.2 -0.0 -0.3 -2.2 -4.0
nitrogen source 5-Aminovaleric (N) -0.2 -0.1 -0.3 -1.9 -4.2
carbon source L-Lysine (C) +0.2 -0.1 +0.2 -3.4 -3.5
nitrogen source Valerolactam (N) +0.1 -0.2 -0.2 -1.7 -4.0
nitrogen source Valerolactam (N) -0.3 +0.1 -0.3 -1.9 -3.7
carbon source 4-Aminobutyric 10 mM (C) -0.0 -0.1 -0.3 -2.3 -3.3
nitrogen source Beta-alanine (N) +0.1 -0.0 +0.3 -2.8 -3.5
nitrogen source Beta-alanine (N) -0.0 +0.1 +0.1 -2.2 -3.6
carbon source 5-Aminovaleric 10 mM (C) +0.3 +0.1 -0.3 -3.0 -2.6
carbon source L-Lysine 10 mM (C) +0.3 -0.3 +0.4 -2.5 -2.7
carbon source Beta-alanine (C) -0.1 -0.0 +0.3 -1.7 -3.2
carbon source Beta-alanine (C) +0.0 +0.3 +0.2 -1.4 -3.5
carbon source Valerolactam (C) +0.0 +0.4 -0.3 -2.1 -2.5
nitrogen source Putrescine (N) -0.3 +0.2 -0.1 -0.4 -3.3
nitrogen source Putrescine (N) +0.0 +0.1 -0.0 -0.6 -3.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.3 +0.1 -0.2 -2.5
carbon source D-Lysine 10 mM (C) -0.2 -0.1 +0.1 -2.8 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 +0.3 -0.3 -0.1 -2.2
phage P. putida Sci small MOI 0.1 -0.6 -1.9 +0.2 +0.5 -1.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.5 +0.2 +0.3 -0.6 -1.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 +0.6 -0.6 -0.9 -1.2
phage P. putida South MOI 1 +0.1 -0.1 +0.3 +0.7 +2.3
phage P. putida PUT10 MOI 10 +0.0 -0.0 +0.1 +0.9 +2.5
phage P. put PUT 10 MOI 10 -0.2 -0.0 +0.3 +1.1 +2.5
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