Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0208 and PP_0209 overlap by 1 nucleotidesPP_0209 and PP_0210 overlap by 4 nucleotidesPP_0210 and PP_0211 overlap by 1 nucleotidesPP_0211 and PP_0213 are separated by 484 nucleotides PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671 _0208 PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213
Group Condition PP_0208 PP_0209 PP_0210 PP_0211 PP_0213
nitrogen source Propandiamine (N) +0.2 +0.3 +0.1 +0.6 -5.9
carbon source L-Lysine (C) +0.2 +0.2 +0.2 -0.3 -3.6
carbon source 5-Aminovaleric 10 mM (C) +0.1 +0.4 +0.3 -0.1 -4.0
nitrogen source Propandiamine (N) +0.2 +0.3 +0.6 +0.5 -5.0
carbon source L-Lysine (C) +0.1 -0.3 +0.0 -0.1 -2.9
carbon source Valerolactam 10 mM (C) +0.3 +0.4 +0.1 +0.3 -4.2
carbon source L-Lysine (C) +0.0 +0.2 -0.1 +0.2 -3.4
carbon source D-Lysine 10 mM (C) +0.1 -0.2 -0.1 +0.1 -2.8
carbon source 4-Aminobutyric 10 mM (C) -0.1 -0.0 -0.1 -0.3 -2.3
nitrogen source 5-Aminovaleric (N) -0.0 -0.2 -0.0 -0.3 -2.2
carbon source 5-Aminovaleric 10 mM (C) +0.2 +0.3 +0.1 -0.3 -3.0
nitrogen source 5-Aminovaleric (N) -0.1 -0.2 -0.1 -0.3 -1.9
phage P. putida Sci small MOI 0.1 -0.8 -0.7 -0.3 -0.4 -0.2
nitrogen source Valerolactam (N) -0.1 -0.3 +0.1 -0.3 -1.9
carbon source D-Lysine 10 mM (C) -0.1 -0.2 -0.3 -0.5 -1.3
phage P. putida PUT 7 MOI 1 -0.7 -0.7 +0.1 -0.7 -0.2
nitrogen source Beta-alanine (N) +0.2 +0.1 -0.0 +0.3 -2.8
carbon source L-Lysine 10 mM (C) -0.0 +0.3 -0.3 +0.4 -2.5
nitrogen source Valerolactam (N) +0.0 +0.1 -0.2 -0.2 -1.7
nitrogen source Beta-alanine (N) +0.1 -0.0 +0.1 +0.1 -2.2
phage P. putida Sci small MOI 0.1 -0.2 -0.6 -1.9 +0.2 +0.5
carbon source Valerolactam (C) +0.2 +0.0 +0.4 -0.3 -2.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.7 +0.3 -0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -1.2 +0.5 -0.3 -0.6
pH Growth at pH7 and (C) D-Glucose -0.1 +0.5 -0.2 -0.1 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.3 +0.6 -0.6 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.2 -0.5 +0.6 -0.2 -0.8
carbon source carbon source 3-O-methyl-glucose 10 mM +0.3 -0.5 -0.6 -0.0 +0.9
nitrogen source NAG (N); with MOPS -0.2 -0.0 -0.0 +1.3 +0.6
carbon source Crotonic (C) +0.1 +0.1 +1.3 +0.4 +0.4
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