Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0205	PP_0206	PP_0207	PP_0208	PP_0209
phage	P. putida Sci small MOI 0.1	-0.6	-0.8	-0.5	-0.8	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	-2.6	-0.0	+0.1	-0.2
carbon source	D-Glucose (C)	+0.2	-3.5	+0.1	+0.0	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.1	-1.9	-0.1	-0.1	-0.1
carbon source	Valerolactone (C)	+0.1	-2.2	-0.0	+0.0	-0.3
temperature shift	Temperature shift 30_to_34; with MOPS	+0.1	-1.7	-0.2	-0.1	-0.2
nitrogen source	D-2-Aminobutyric (N)	-0.1	-1.0	-0.1	-0.0	-0.6
carbon source	Trisodium citrate (C)	-0.1	-0.3	-0.5	-0.2	-0.7
phage	P. putida Sci Big MOI 0.1	-0.5	+0.0	-0.5	-0.3	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.1	-1.2	-0.1	-0.1	-0.2
phage	P. putida PUT 7 MOI 1	-0.4	+0.4	-0.3	-0.7	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.8	-0.1	-0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-1.3	-0.0	+0.0	-0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2	-1.3	+0.0	-0.0	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4	-2.7	-0.1	+0.1	+0.7
phage	P. putida Missley MOI 0.1	-0.4	+0.3	-0.6	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-1.6	+0.1	+0.1	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.8	+0.1	+0.2	-0.5
temperature	Growth at 25C	+0.1	-1.0	-0.4	+0.0	+0.5
phage	P. putida Sci small MOI 0.1	+0.0	+0.6	-0.5	-0.2	-0.6
carbon source	4-Methyl-2-oxopentanoic (C)	+0.2	-1.3	+0.1	-0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.4	+0.1	+0.3	-1.2
nitrogen source	Propandiamine (N)	+0.2	-1.2	+0.3	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.0	+0.1	+0.0	+0.3
carbon source	acetate (C)	+0.1	+0.7	-0.3	-0.2	-0.5
pH	Valerolactone (C) pH 6.5	+0.2	+1.0	+0.1	-0.3	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	+1.1	+0.2	-0.2	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	+0.5	+0.1	+0.3	+0.7
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.1	+1.1	+0.3	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.3	+0.1	+0.0	-0.1