Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0192 and PP_0194 are separated by 154 nucleotidesPP_0194 and PP_0195 overlap by 22 nucleotidesPP_0195 and PP_0196 are separated by 50 nucleotidesPP_0196 and PP_0197 overlap by 1 nucleotides PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170 _0192 PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314 _0194 PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772 _0195 PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733 _0196 PP_0197: PP_0197 - conserved protein of unknown function, at 247,733 to 248,320 _0197
Group Condition PP_0192 PP_0194 PP_0195 PP_0196 PP_0197
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -0.3 -3.6 +0.3 -1.0
pH Growth at pH7 and (C) Trisodium citrate -0.1 +0.1 -4.9 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -1.3 -2.2 +0.1 -0.1
carbon source D-Glucose (C) -0.3 +0.3 -2.5 +0.1 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 -0.1 -2.2 -0.1 -0.7
nitrogen source Urea (N); with MOPS -0.4 -0.5 -1.9 -0.1 -0.3
nitrogen source Propiolactam (N) -0.0 +0.1 -2.5 -0.0 -0.3
pH Growth at pH7 and (C) D-Glucose +0.2 +0.3 -2.4 +0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -2.0 -0.2 -0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 +0.1 -2.6 +0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -1.1 -1.3 -0.0 +0.1
temperature shift Temperature shift 30_to_25; with MOPS +0.0 -0.2 +0.6 +0.1 -2.0
carbon source Myristic (C) -0.0 +0.9 -1.1 +0.4 -1.6
carbon source acetate (C) -0.1 -1.4 +1.2 -0.4 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 +0.6 -1.9 +0.2 +0.2
nitrogen source 2,6-diaminopimelic (N) +0.3 -0.3 +0.8 -0.5 -1.0
temperature shift Temperature shift 30_to_21; with MOPS -0.3 +0.8 -1.5 +0.3 +0.1
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL +0.3 -0.2 -1.4 +0.2 +0.6
nitrogen source Hippuric (N) +0.3 +0.4 -1.5 -0.0 +0.7
carbon source L-Leucine (C) +0.1 +0.7 +0.7 -1.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -0.5 +1.7 +0.3 -0.2
nitrogen source D-2-Aminobutyric (N) +0.8 +0.8 -0.8 -0.7 +1.1
nitrogen source nitrogen source nitrite 1mM -0.2 -0.4 +2.0 +0.4 -0.1
micoeukaryotes C.elegans, mixed culture-2 +0.8 +0.1 +1.1 +0.7 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.9 +0.4 +0.4 +0.6 +0.6
micoeukaryotes C.elegans, mixed culture-1 +0.7 +0.3 +0.6 +0.7 +0.6
carbon source 4-Hydroxyvalerate (C) (40mM) +0.8 +0.2 +0.7 +0.4 +0.9
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.9 +0.1 +0.8 +0.6 +0.7
micoeukaryotes Dictyostellum sp.mixed culture-1 +1.0 +0.0 +1.3 +0.3 +0.6
nitrogen source D-2-Aminobutyric (N) +0.0 +1.9 +1.0 -0.1 +0.8
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