Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0190 and PP_0191 are separated by 231 nucleotidesPP_0191 and PP_0192 are separated by 8 nucleotidesPP_0192 and PP_0194 are separated by 154 nucleotidesPP_0194 and PP_0195 overlap by 22 nucleotides PP_0190: PP_0190 - putative disulfide bond formation protein B, at 242,291 to 242,797 _0190 PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499 _0191 PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170 _0192 PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314 _0194 PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772 _0195
Group Condition PP_0190 PP_0191 PP_0192 PP_0194 PP_0195
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.9 -0.4 -0.3 -3.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.0 -0.1 -2.0 -0.2
pH Growth at pH7 and (C) Trisodium citrate +0.4 +0.3 -0.1 +0.1 -4.9
nitrogen source 2,6-diaminopimelic (N) -0.9 -4.0 +0.3 -0.3 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 +0.1 -0.2 -1.3 -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 -1.5 +0.0 +0.6 -1.9
carbon source D-Glucose (C) -0.4 +0.8 -0.3 +0.3 -2.5
nitrogen source Urea (N); with MOPS +0.5 +0.4 -0.4 -0.5 -1.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.0 +0.3 -1.1 -1.3
nitrogen source Propiolactam (N) -0.2 +1.3 -0.0 +0.1 -2.5
pH Growth at pH7 and (C) D-Glucose +0.5 +0.4 +0.2 +0.3 -2.4
carbon source 3-Hydroxydecanoic (C) +0.7 +0.4 +0.2 -0.1 -1.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +1.0 -0.8 -1.1 +0.2
phage P. putida South MOI 10 +1.1 -0.7 +0.0 +0.7 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 -1.3 -0.2 -0.5 +1.7
carbon source carbon source D-Glucose 55.5 mM -0.7 +0.3 +0.0 -0.7 +1.6
carbon source L-Leucine (C) +0.3 -1.3 +0.1 +0.7 +0.7
carbon source acetate (C) +0.4 +0.8 -0.1 -1.4 +1.2
nitrogen source D-2-Aminobutyric (N) -0.4 -1.4 +0.0 +1.9 +1.0
phage P. put PUT 10 MOI 10 +1.4 +0.4 +0.3 +0.1 -1.0
carbon source ferulate (C); with MOPS +0.4 +1.0 +0.5 -0.6 +0.6
nitrogen source nitrogen source nitrite 1mM +0.2 +0.3 -0.2 -0.4 +2.0
nitrogen source D-2-Aminobutyric (N) +0.9 +1.2 +0.8 +0.8 -0.8
carbon source 1,4-Butanediol (C) -0.3 +1.9 +0.5 +0.5 +0.5
carbon source 1,4-Butanediol (C) +0.2 +2.0 +0.5 +0.2 +0.7
micoeukaryotes C.elegans, mixed culture-2 +0.2 +1.3 +0.8 +0.1 +1.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.8 +1.3 +0.9 +0.4 +0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.8 +0.7 +1.0 +0.0 +1.3
carbon source 4-Hydroxyvalerate (C) (40mM) +0.4 +2.8 +0.7 +0.2 +0.7
carbon source 4-Hydroxyvalerate (C) (40mM) +0.5 +2.6 +0.8 +0.2 +0.7
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