Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0162 and PP_0163 are separated by 88 nucleotidesPP_0163 and PP_0164 are separated by 272 nucleotidesPP_0164 and PP_0165 are separated by 10 nucleotidesPP_0165 and PP_0166 are separated by 156 nucleotides PP_0162: PP_0162 - RNA polymerase sigma-70 factor, ECF subfamily, at 185,617 to 186,138 _0162 PP_0163: PP_0163 - putative transcriptional regulator, at 186,227 to 186,916 _0163 PP_0164: PP_0164 - conserved protein of unknown function, at 187,189 to 187,881 _0164 PP_0165: PP_0165 - GGDEF domain protein, at 187,892 to 189,838 _0165 PP_0166: PP_0166 - HlyD family secretion protein, at 189,995 to 191,371 _0166
Group Condition PP_0162 PP_0163 PP_0164 PP_0165 PP_0166
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.3 -0.7 -1.5 -3.7 -3.8
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.1 -0.5 -0.7 -4.2 -3.6
stress Growth with Chloride 500 mM; with MOPS -0.0 -0.3 -1.8 -3.5 -2.8
stress Growth with Chloride 500 mM; with MOPS -0.0 +0.0 -1.7 -3.5 -3.1
stress Growth with Chloride 500 mM; with MOPS +0.0 +0.1 -1.1 -3.5 -3.7
carbon source Vanillic Acid (C) -0.1 +0.6 -5.7 -1.4 -1.3
carbon source Vanillin (C) -0.2 +0.5 -6.7 -0.7 -0.9
carbon source Vanillic Acid (C) +0.1 +0.6 -5.8 -1.2 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.6 -6.3 +0.8 +1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 -0.8 -5.9 +0.6 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.3 -6.1 +0.9 +0.8
carbon source Tween 20 (C) -0.3 -0.1 -7.1 +1.4 +1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 -0.4 -6.2 +0.8 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.2 -6.1 +1.2 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.3 -0.6 -5.9 +1.2 +1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.2 -0.5 -5.6 +1.2 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.2 -0.5 -5.7 +1.2 +1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 -0.4 -5.4 +1.0 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.0 -0.2 -6.0 +1.4 +1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 -0.6 -5.3 +0.9 +1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.0 -0.5 -5.3 +1.2 +1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.0 -5.9 +1.5 +1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.2 -0.5 -5.2 +2.1 +2.2
carbon source 1-Pentanol (C) +0.2 -0.3 -5.1 +2.0 +2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.0 -4.7 +2.0 +2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.0 -0.3 -5.5 +3.1 +3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 +0.1 -5.4 +3.3 +3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 -0.2 -3.7 +3.3 +3.5
temperature shift Temperature shift 10_to_30 -0.0 +0.2 -1.8 +2.9 +3.5
carbon source Delta-Decalactone (C) +0.2 +0.5 -1.8 +4.5 +4.8
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