Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0134 and PP_5428 are separated by 174 nucleotidesPP_5428 and PP_0135 are separated by 43 nucleotidesPP_0135 and PP_0136 are separated by 2 nucleotidesPP_0136 and PP_0137 are separated by 745 nucleotides PP_0134: PP_0134 - conserved exported protein of unknown function, at 142,057 to 142,878 _0134 PP_5428: PP_5428 - conserved exported protein of unknown function, at 143,053 to 143,343 _5428 PP_0135: PP_0135 - conserved exported protein of unknown function, at 143,387 to 143,548 _0135 PP_0136: PP_0136 - conserved exported protein of unknown function, at 143,551 to 144,021 _0136 PP_0137: PP_0137 - glutamate/aspartate-proton DAACS transporter, at 144,767 to 146,095 _0137
Group Condition PP_0134 PP_5428 PP_0135 PP_0136 PP_0137
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -1.7 -1.1 -0.1 +0.1
nitrogen source DL-2-Aminobutyric (N) -0.2 -0.0 -0.2 +0.2 -3.1
carbon source L-Glutamic (C) -0.2 -0.4 +0.2 +0.1 -2.8
nitrogen source DL-2-Aminobutyric (N) +0.0 -0.3 +0.3 -0.0 -3.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.5 -0.8 -1.0 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.0 -0.2 -0.9 -0.5 -0.8
carbon source L-Glutamic (C) +0.3 +0.0 +0.8 +0.4 -3.9
carbon source L-Glutamic (C) -0.1 -0.4 +0.0 +0.1 -1.9
microaerobic m9 microaerobic M9 -0.5 +0.4 -1.2 -0.3 +0.1
carbon source L-Glutamine (C) +0.2 +0.3 +0.6 +0.4 -2.8
carbon source D-Glucose (C); with MOPS +0.1 -1.0 -1.2 +0.2 +0.7
pH Growth at pH6 and (C) D-Glucose -0.0 +0.4 -1.5 +0.4 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 -0.2 +0.3 +0.4 -1.3
carbon source 1,3-Butandiol (C) +0.1 +0.5 -1.2 -0.2 +0.7
pH Valerolactone (C) pH 6.5 +0.3 +0.5 +0.3 -0.7 +0.6
phage P. putida Sci small MOI 0.1 +0.3 +0.5 -0.1 +0.7 +0.9
carbon source Butanol (C) +0.2 +0.8 +0.7 +0.4 +0.9
carbon source 1-Pentanol (C) +0.3 +0.9 +0.6 +0.2 +1.3
phage P. putida Missley MOI 0.1 +0.6 +0.7 +0.5 +0.7 +0.8
stress Growth with Chloride 500 mM +0.4 +0.6 +0.4 +0.3 +1.4
phage P. putida PUT 7 MOI 1 +0.7 +0.4 +0.8 +0.8 +0.5
carbon source Delta-Nonalactone (C) +0.4 +0.6 +0.8 +0.4 +1.3
carbon source Decanoic (C) +0.3 +0.9 +0.7 +0.4 +1.5
stress Growth with Chloride 500 mM; with MOPS +0.2 +0.4 +1.2 +0.3 +1.8
stress Growth with Chloride 500 mM +0.4 +0.7 +0.8 +0.7 +1.5
stress Growth with Chloride 500 mM; with MOPS +0.5 +0.2 +0.7 +0.6 +2.1
stress Growth with Chloride 500 mM; with MOPS +0.3 +0.3 +1.2 +0.9 +1.9
stress Growth with Chloride 500 mM; with MOPS +0.6 +0.4 +0.8 +1.0 +1.7
stress Growth with Chloride 500 mM; with MOPS +0.5 +0.9 +0.8 +0.7 +2.1
stress Growth with Chloride 500 mM; with MOPS +0.4 +0.9 +1.2 +0.7 +2.1
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