Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0125	PP_0126	PP_0127	PP_0128	PP_0129
micoeukaryotes	C.elegans, mixed culture-1	-1.8	-3.1	-5.7	+0.3	-1.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.4	-1.5	-6.3	-0.1	-0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.3	-1.2	-5.1	-0.3	-0.6
nitrogen source	NAG (N); with MOPS	-1.4	-5.5	+0.0	-0.6	-0.2
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	-0.1	-0.4	-7.0	-0.0	-0.1
stress	R2A with Fusaric 240 ug/mL	-0.9	-2.7	-3.1	-0.3	-0.1
nitrogen source	4-aminobutyric (N)	-0.1	-0.0	-6.6	+0.0	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-2.7	-2.0	-0.0	-0.1
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	+0.1	-0.4	-6.3	+0.1	-0.0
carbon source	ferulate (C); with MOPS	-3.8	-0.9	-2.2	+0.3	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.4	-7.0	+0.6	-0.0
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	-0.3	+0.6	-6.5	+0.0	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.1	-0.9	-1.9	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.6	-7.4	+1.0	-0.3
stress	R2A with Fusaric 480 ug/mL	-0.3	-0.2	-5.1	-0.2	-0.2
pH	D-Glucose (C) pH 6.5	-0.7	-0.6	-4.9	+0.1	-0.0
micoeukaryotes	C.elegans, mixed culture-2	-0.6	-1.8	-2.9	+0.1	-0.8
nitrogen source	4-aminobutyric (N)	-0.2	-0.1	-5.6	+0.0	-0.1
pH	D-Glucose (C) pH 6.5	-0.6	-0.4	-4.7	+0.1	-0.0
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	+0.1	+0.3	-5.8	+0.1	-0.3
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.4	-1.6	-3.5	+0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.0	-6.7	+0.8	+0.1
nitrogen source	4-Aminobutyric (N)	+0.1	-0.2	-5.4	+0.3	-0.1
carbon source	L-Lysine (C)	-2.1	-0.5	-2.8	+0.1	-0.0
carbon source	3-Hydroxyhexanoic (C)	-0.1	-0.8	-4.2	+0.3	-0.2
stress	R2A with Fusaric 480 ug/mL	+0.1	+0.2	-4.9	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.6	-2.4	-2.7	-0.1	+0.1
nitrogen source	Ammonium chloride and TNT (N)	+0.6	-0.5	-4.3	+0.3	-0.0
biofilm mediium pdms	biofilm mediium PDMS; 7 hours	+0.4	+0.0	-4.3	-0.0	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-3.3	-0.9	+1.5	+0.3	-0.0