Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_0116	PP_0117	PP_0118	PP_0119	PP_0120
carbon source	carbon source Bisabolene 48.9 mM	-0.2	-4.9	-1.7	-1.6	-4.6
carbon source	carbon source D-Glucose 55.5 mM	+0.1	-3.5	-2.6	-2.1	-3.1
carbon source	carbon source Bisabolol 45 mM	+0.1	-3.7	-1.4	-1.4	-4.7
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.3	-2.6	-1.4	-1.2	-2.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	-3.0	-1.5	-0.6	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	-2.3	-1.7	-1.0	-2.3
carbon source	Vanillin (C)	+0.1	-1.9	-1.1	-1.4	-2.2
carbon source	Ferulic Acid (C)	-0.1	-2.1	-1.1	-1.5	-1.6
carbon source	Ferulic Acid (C)	+0.1	-1.9	-1.4	-1.3	-1.8
carbon source	Vanillin (C)	-0.5	-2.1	-1.3	-0.7	-1.7
phage	FRSphage	-0.3	-2.4	-1.1	-1.1	-1.4
nitrogen source	Hippuric (N)	-0.3	-2.1	-1.0	-0.6	-2.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-2.0	-1.0	-1.3	-1.5
stress	2-Ethylhexanol 0.4 vol%	-0.2	-1.4	-0.6	-2.9	-1.1
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.1	-2.0	-1.4	-0.5	-2.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	-2.1	-1.6	-0.8	-2.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.9	-0.7	-0.4	-3.6	-0.4
carbon source	Vanillic Acid (C)	-0.1	-2.1	-1.2	-0.9	-1.7
nitrogen source	Hippuric (N)	+0.1	-2.2	-1.4	-0.7	-1.6
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.1	-1.7	-1.2	-0.8	-1.9
nitrogen source	Propandiamine (N)	+0.4	-2.1	-0.9	-0.4	-2.4
stress	Geraniol 1 vol%	+0.3	-1.7	-0.7	-2.3	-1.1
nitrogen source	D-2-Aminobutyric (N)	+0.8	-1.8	-1.3	-0.9	-2.1
nitrogen source	D-2-Aminobutyric (N)	+0.4	-1.9	-0.7	+0.6	-2.3
carbon source	Delta-Nonalactone (C)	+0.1	+2.1	+1.4	-0.3	+2.2
nitrogen source	DL-2-Aminobutyric (N)	-0.3	+2.0	+1.6	+1.4	+2.2
carbon source	L-Leucine (C)	-0.3	+2.5	+2.1	+0.9	+2.5
nitrogen source	DL-2-Aminobutyric (N)	-0.1	+2.2	+2.0	+1.7	+2.4
carbon source	L-Leucine (C)	-0.3	+2.5	+2.0	+1.5	+2.6
carbon source	L-Leucine (C)	+0.1	+3.6	+2.8	+1.8	+3.5