Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0113	PP_0114	PP_0115	PP_0116	PP_0117
carbon source	carbon source Bisabolene 48.9 mM	-0.4	-0.7	+0.2	-0.2	-4.9
carbon source	carbon source Bisabolol 45 mM	-0.5	-0.7	-0.0	+0.1	-3.7
carbon source	carbon source D-Glucose 55.5 mM	-0.1	-1.0	+0.1	+0.1	-3.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.7	-1.5	-0.4	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.1	+0.1	+0.2	-3.0
nitrogen source	Hippuric (N)	-0.1	-0.2	-0.2	-0.3	-2.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.4	-0.1	+0.1	+0.3	-2.6
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.5	-0.8	-0.1	+0.2	-1.2
nitrogen source	NAG (N); with MOPS	+0.2	-0.6	-0.1	-0.1	-1.9
carbon source	Vanillin (C)	+0.3	-0.1	+0.0	-0.5	-2.1
carbon source	carbon source 4-vinylphenol 0.01 mM	-1.4	-0.3	-0.2	+0.6	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.1	-0.8	+0.4	-0.6	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-0.2	-0.1	+0.8	-2.3
no phage control	Time6-nophage	-0.4	-0.9	-0.1	+0.4	-1.1
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.7	-0.1	+0.4	-1.9
carbon source	ferulate (C); with MOPS	+0.0	+0.4	-0.0	-0.6	-2.0
phage moi 100	Time6-phageFRS	-0.6	-0.3	+0.0	+0.4	-1.6
carbon source	Ferulic Acid (C)	-0.2	+0.4	+0.1	-0.1	-2.1
nitrogen source	Hippuric (N)	+0.3	-0.2	-0.0	+0.1	-2.2
no phage control	Time6-nophage	-0.3	-0.6	+0.0	+0.5	-1.4
nitrogen source	Propandiamine (N)	+0.1	-0.1	+0.3	+0.4	-2.1
nitrogen source	D-2-Aminobutyric (N)	-0.3	-0.0	-0.1	+0.8	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.3	+0.2	+0.7	-2.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.2	+0.5	+0.3	+0.4
carbon source	ferulate (C); with MOPS	+1.1	+0.1	+0.3	+0.2	-1.1
nitrogen source	DL-2-Aminobutyric (N)	-0.2	-0.2	-0.2	-0.1	+2.2
carbon source	L-Leucine (C)	-0.4	+0.1	-0.0	-0.3	+2.5
carbon source	L-Leucine (C)	-0.2	-0.2	+0.3	-0.3	+2.5
carbon source	Delta-Nonalactone (C)	+0.5	+0.3	-0.0	+0.1	+2.1
carbon source	L-Leucine (C)	+0.3	-0.6	-0.1	+0.1	+3.6