Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5426	PP_0103	PP_0104	PP_0105	PP_0106
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-1.1	-0.6	-0.9	-0.9
nitrogen source	D-2-Aminobutyric (N)	-2.0	+0.1	-0.3	-0.6	-0.2
nitrogen source	NAG (N); with MOPS	-2.1	-0.6	-0.0	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-1.0	-0.6	+0.1	-0.4
carbon source	Valerolactone (C)	-0.3	-0.9	-0.2	-0.7	-0.0
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.4	-0.3	-0.9	-0.3
nitrogen source	NAG (N); with MOPS	-1.1	-0.1	-0.3	-0.7	+0.2
carbon source	1,3-Hexanediol (C)	+0.1	-0.3	-0.2	-1.0	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-1.7	-0.4	+0.1	-0.1	+0.0
carbon source	L-Phenylalanine 5 mM (C)	-1.5	-0.2	-0.2	+0.1	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.7	+0.2	-0.2	-0.2	+0.0
temperature shift	Temperature shift 30_to_25	-0.9	-0.3	-0.3	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.1	-0.6	-1.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7	-0.7	-0.5	-0.5	-0.6
carbon source	L-Leucine (C)	+0.2	-0.2	-0.6	-0.5	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-1.1	-0.5	+0.1	+0.2	+0.3
pH	pH 4	-1.0	+0.1	-0.2	-0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-0.2	+0.0	-1.0	-0.3
nitrogen source	D-2-Aminobutyric (N)	-1.2	+0.4	+0.1	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.2	+0.1	+0.3	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.2	+0.1	+0.1	+0.0	+0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.3	+0.2	+0.4	+0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0	-0.1	-0.4	-0.7	+0.0
nitrogen source	Propandiamine (N)	+0.7	-0.8	+0.1	-0.2	+0.1
pH	pH 5	-0.1	+0.3	+0.1	-0.7	+0.6
stress	Cholinium alpha ketoglutarate 10 vol%	+1.2	-0.5	+0.1	-0.1	-0.0
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.9	-0.2	+0.2	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.9	+0.1	+0.5	+0.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+1.6	-0.4	+0.0	+0.0	-0.1
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.1	+0.3	+0.6	+0.6	+0.8