Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0080 and PP_0081 are separated by 13 nucleotidesPP_0081 and PP_0082 are separated by 120 nucleotidesPP_0082 and PP_0083 overlap by 4 nucleotidesPP_0083 and PP_0084 are separated by 110 nucleotides PP_0080: PP_0080 - conserved protein of unknown function, at 90,447 to 91,064 _0080 PP_0081: PP_0081 - conserved protein of unknown function, at 91,078 to 91,449 _0081 PP_0082: PP_0082 - tryptophan synthase alpha chain, at 91,570 to 92,379 _0082 PP_0083: PP_0083 - tryptophan synthase beta chain, at 92,376 to 93,593 _0083 PP_0084: PP_0084 - HTH-type transcriptional regulator TrpI, at 93,704 to 94,600 _0084
Group Condition PP_0080 PP_0081 PP_0082 PP_0083 PP_0084
nitrogen source nitrogen source Ammonium chloride 20mM +0.1 -0.3 -6.3 -6.2 -0.4
nitrogen source L-Alanine (N) +0.1 -0.1 -6.3 -6.4 -0.2
nitrogen source L-Arginine (N) -0.2 -0.3 -6.6 -5.8 +0.1
nitrogen source 5-Aminovaleric (N) +0.1 +0.0 -6.6 -6.2 -0.1
nitrogen source Valerolactam (N) -0.2 +0.1 -6.4 -6.1 -0.1
nitrogen source Ammonium chloride (N) +0.2 -0.1 -6.4 -6.4 -0.0
nitrogen source Beta-alanine (N) -0.0 -0.1 -6.5 -5.9 -0.1
nitrogen source L-Histidine (N) -0.1 -0.1 -5.9 -5.6 -0.9
temperature shift Temperature shift 10_to_21 -0.1 -0.2 -5.4 -6.0 -0.8
carbon source p-Coumaric (C) -0.3 -0.1 -6.0 -6.1 -0.0
nitrogen source 4-aminobutyric (N) -0.2 -0.0 -6.1 -6.2 +0.0
temperature shift Temperature shift 10_to_21 +0.1 +0.0 -6.2 -5.4 -1.0
nitrogen source L-Histidine (N) -0.0 -0.2 -6.0 -5.5 -0.8
nitrogen source L-Valine (N) -0.1 -0.2 -6.1 -6.0 -0.2
nitrogen source Urea (N) -0.1 +0.1 -6.2 -6.2 -0.1
temperature Growth at 25C +0.0 -0.4 -6.0 -5.9 -0.2
temperature Growth at 34C +0.0 -0.3 -5.6 -6.1 -0.4
nitrogen source nitrate (N) -0.6 -0.3 -5.9 -5.7 +0.1
nitrogen source L-Ornithine (N) -0.1 -0.2 -6.2 -5.9 +0.0
temperature shift Temperature shift 10_to_25 -0.2 -0.3 -5.8 -5.6 -0.6
nitrogen source nitrate (N) +0.1 -0.0 -6.3 -6.1 -0.0
nitrogen source nitrate (N) +0.2 -0.1 -6.4 -6.0 +0.1
nitrogen source Glycine (N) +0.0 +0.2 -6.7 -5.8 -0.0
nitrogen source nitrite (N) +0.1 -0.2 -5.7 -6.3 -0.1
nitrogen source L-Lysine (N) -0.2 +0.2 -5.8 -6.4 -0.0
temperature shift Temperature shift 30_to_4; with MOPS +0.2 -0.4 -5.8 -5.6 -0.5
temperature shift Temperature shift 10_to_25 +0.2 -0.4 -5.7 -5.8 -0.4
nitrogen source Ammonium chloride (N) +0.2 +0.0 -6.3 -5.8 -0.1
pH Growth at pH7 and (C) D-Glucose +0.5 -0.2 -5.9 -5.7 -0.3
nitrogen source Ammonium chloride (N) +0.7 -0.6 -5.9 -5.8 +0.0
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