Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0063 and PP_0064 are separated by 97 nucleotidesPP_0064 and PP_0065 are separated by 11 nucleotidesPP_0065 and PP_0066 are separated by 23 nucleotidesPP_0066 and PP_0067 overlap by 4 nucleotides PP_0063: PP_0063 - putative Lipid A biosynthesis lauroyl acyltransferase, at 73,525 to 74,412 _0063 PP_0064: PP_0064 - conserved protein of unknown function, at 74,510 to 74,824 _0064 PP_0065: PP_0065 - NAD-binding component of TrK potassium transporter, at 74,836 to 76,209 _0065 PP_0066: PP_0066 - Ribosomal RNA small subunit methyltransferase B, at 76,233 to 77,543 _0066 PP_0067: PP_0067 - Methionyl-tRNA formyltransferase, at 77,540 to 78,472 _0067
Group Condition PP_0063 PP_0064 PP_0065 PP_0066 PP_0067
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -6.3 -0.0 +0.5 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -6.0 -0.2 +0.5 -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -6.1 -0.0 +0.7 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -0.9 -3.2 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.6 +0.2 -3.3 -0.1 N.D.
carbon source Delta-Undecalactone (C) -1.7 -0.3 -3.2 +0.5 N.D.
phage P. put PUT 10 MOI 10 +1.8 -0.3 +1.1 -6.9 N.D.
phage P. putida PUT10 MOI 10 +2.4 +0.0 +0.8 -7.2 N.D.
phage P. putida PUT10 MOI 1 +1.5 +0.2 +0.6 -5.7 N.D.
phage P. put PUT 10 MOI 1 +1.0 +0.2 +0.6 -5.1 N.D.
phage P. put PUT 10 MOI 0.1 +1.1 +0.4 +0.4 -5.0 N.D.
phage P. putida PUT10 MOI 10 +2.3 +0.2 +0.7 -6.2 N.D.
phage P. putida South MOI 0.1 +2.4 +0.3 +1.3 -6.9 N.D.
phage P. putida PUT10 MOI 0.1 +1.9 -0.4 +0.8 -5.1 N.D.
phage P. put PUT 10 MOI 10 +1.7 +0.3 +0.8 -5.4 N.D.
phage P. put PUT 10 MOI 0.1 +0.6 +0.5 +0.4 -3.6 N.D.
phage P. putida PUT10 MOI 0.1 +1.6 +0.4 -0.1 -4.0 N.D.
phage P. putida PUT10 MOI 1 +1.7 +0.3 +1.2 -5.1 N.D.
phage P. put PUT 10 MOI 1 +1.3 +0.2 +0.6 -4.0 N.D.
phage P. put South MOI 0.1 +2.3 +0.0 +1.2 -5.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.5 +1.4 -2.1 +0.6 N.D.
phage P. put South MOI 1 +2.0 +0.2 +1.2 -4.7 N.D.
phage P. putida South MOI 0.1 +2.5 +0.1 +1.3 -5.1 N.D.
phage PUT 8 MOI 1 +2.2 +0.2 +1.7 -5.3 N.D.
phage P. put South MOI 0.1 +1.8 +0.1 +1.3 -4.4 N.D.
phage P. putida South MOI 10 +1.7 -0.2 +0.9 -2.9 N.D.
phage P. putida South MOI 1 +2.9 +0.2 +1.4 -4.9 N.D.
phage P. put South MOI 1 +2.7 +0.0 +1.2 -4.2 N.D.
phage PUT8 MOI 0.1 +2.1 +0.2 +1.7 -4.2 N.D.
phage PUT8 MOI 0.1 +2.1 -0.3 +1.8 -3.8 N.D.
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