Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0055 and PP_0056 are separated by 227 nucleotidesPP_0056 and PP_0057 are separated by 97 nucleotidesPP_0057 and PP_0058 are separated by 174 nucleotidesPP_0058 and PP_0059 are separated by 46 nucleotides PP_0055: PP_0055 - transcriptional regulator, at 63,828 to 64,715 _0055 PP_0056: PP_0056 - choline dehydrogenase, at 64,943 to 66,595 _0056 PP_0057: PP_0057 - major facilitator family transporter, at 66,693 to 68,312 _0057 PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272 _0058 PP_0059: PP_0059 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 69,319 to 69,846 _0059
Group Condition PP_0055 PP_0056 PP_0057 PP_0058 PP_0059
carbon source DL-3-Hydroxyisobutyric (C) -7.1 -5.7 -6.3 +0.2 N.D.
carbon source DL-3-Hydroxyisobutyric (C) -6.3 -5.5 -6.2 +0.3 N.D.
carbon source 3-Hydroxypropionate (C) -6.8 -6.4 -0.8 +0.2 N.D.
carbon source 3-Hydroxypropionate (C) -4.7 -4.6 -0.7 +0.2 N.D.
carbon source DL-3-Hydroxybutyric (C) -1.4 -1.7 -2.4 +0.3 N.D.
carbon source DL-3-Hydroxybutyric (C) -1.3 -1.7 -2.4 +0.3 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.3 -0.2 -0.0 -1.9 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.3 -0.1 -0.2 -1.6 N.D.
carbon source 2,3-Butanediol (C) +0.0 -0.1 -0.1 -2.0 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.3 -0.1 -0.1 -1.6 N.D.
pH Valerolactone (C) pH 6.5 -0.7 -0.6 -0.2 -0.5 N.D.
carbon source 1,3-Butandiol (C) -0.4 -0.6 -0.8 -0.1 N.D.
carbon source Valerolactone (C) -0.1 -0.9 -0.1 -0.7 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 -0.1 -0.0 -1.5 N.D.
carbon source L-Glutamic (C) -0.2 +0.1 -0.0 -1.6 N.D.
nitrogen source NAG (N); with MOPS -1.2 -0.1 -0.4 -0.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 -0.1 -1.5 N.D.
pH Growth at pH6 and (C) D-Glucose -1.2 -0.4 +0.2 -0.2 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.3 +0.0 -1.4 N.D.
carbon source 1,4-Butanediol (C) -0.4 -0.4 -0.5 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.3 -0.1 -1.0 N.D.
carbon source L-Valine (C) -0.4 -0.4 -0.6 +1.1 N.D.
carbon source L-Valine (C) -0.4 -0.3 -0.7 +1.1 N.D.
phage P. put PUT 10 MOI 10 -0.1 -0.2 -0.6 +0.8 N.D.
carbon source Valeric (C) +0.7 +0.2 -0.4 -0.5 N.D.
carbon source L-Alanine (C) +0.7 +0.8 -0.5 -1.0 N.D.
carbon source Delta-Nonalactone (C) -0.2 -0.2 -0.3 +1.6 N.D.
stress Butanol 0.6 vol% +0.2 +0.1 +0.2 +1.4 N.D.
carbon source Lignin Monomers (C) -0.0 -0.0 +0.1 +2.7 N.D.
carbon source Lignin Monomers (C) -0.1 -0.1 -0.1 +3.4 N.D.
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