Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0051	PP_0052	PP_0053	PP_0054	PP_0055
carbon source	3-Hydroxypropionate (C)	-0.1	+0.2	+0.0	-0.2	-6.8
carbon source	DL-3-Hydroxyisobutyric (C)	+0.2	+0.2	+0.0	+0.1	-7.1
carbon source	DL-3-Hydroxyisobutyric (C)	+0.3	+0.1	-0.0	-0.1	-6.3
carbon source	3-Hydroxypropionate (C)	+0.1	+0.1	+0.0	+0.1	-4.7
phage	P. putida Sci small MOI 0.1	+0.0	-0.2	-0.2	-1.8	-0.3
nitrogen source	NAG (N); with MOPS	+0.3	-0.6	+0.1	-0.7	-1.2
carbon source	Tween 20 (C)	-0.1	-0.8	-0.1	-0.3	-0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.5	-0.5	-0.2	+0.2	-0.3
carbon source	DL-3-Hydroxybutyric (C)	-0.1	+0.0	+0.1	-0.0	-1.3
carbon source	DL-3-Hydroxybutyric (C)	-0.1	+0.2	+0.1	-0.1	-1.4
pH	Growth at pH8 and (C) Trisodium citrate	+0.2	-0.3	-0.2	-0.8	+0.1
pH	Growth at pH7 and (C) D-Glucose	+0.1	+0.4	-0.1	-0.6	-0.5
pH	Growth at pH6 and (C) D-Glucose	-0.1	+0.6	-0.0	+0.0	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.5	-0.1	-0.1	+0.6
carbon source	ferulate (C); with MOPS	+0.4	-0.1	+0.2	-0.7	-0.1
carbon source	ferulate (C); with MOPS	+0.6	-0.4	-0.0	+0.3	-0.8
nitrogen source	NAG (N); with MOPS	+0.2	+0.4	+0.4	-0.8	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4	-0.6	+0.3	+0.5	+0.1
carbon source	Valeric (C)	-0.5	-0.2	-0.2	+0.1	+0.7
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	-0.2	+0.1	+0.5	-0.6
carbon source	1,3-Butandiol (C)	-0.2	+0.3	-0.2	+0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.4	-0.3	-0.5	+0.5
carbon source	carbon source D-Glucose 55.5 mM	+0.3	-0.6	-0.2	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.3	-0.4	+0.7	-0.1
carbon source	L-Alanine (C)	-0.7	-0.1	+0.3	+0.1	+0.7
carbon source	carbon source Bisabolene 48.9 mM	+0.6	-0.3	-0.2	+0.1	+0.5
pH	pH 8	+0.8	-0.3	+0.1	+0.4	-0.1
nitrogen source	D-2-Aminobutyric (N)	+0.3	+0.3	-0.4	+0.3	+0.5
nitrogen source	nitrogen source nitrite 1mM	+0.5	-0.2	+0.1	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.0	-0.1	+0.8	+0.3