Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0044	PP_0045	PP_0046	PP_0047	PP_0048
carbon source	D-Glucose (C); with MOPS	-1.1	+0.1	-0.1	+0.2	-5.2
carbon source	D-Glucose (C)	-0.8	+0.2	-0.2	+0.1	-5.1
nitrogen source	nitrate (N)	-0.2	-0.0	-0.1	-0.0	-5.2
temperature	Growth at 25C	+0.2	-0.0	+0.0	-0.2	-5.5
carbon source	4-Methyl-2-oxopentanoic (C)	-0.1	-0.2	+0.1	-0.1	-4.9
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	+0.2	-0.6	+0.3	-5.1
carbon source	D-Glucose (C)	+0.0	-0.1	+0.1	+0.0	-5.1
temperature	Growth at 25C; with MOPS	-0.1	+0.0	+0.2	+0.2	-5.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.0	-0.0	+0.1	+0.1	-5.1
nitrogen source	Urea (N)	+0.2	-0.2	-0.0	+0.4	-5.2
carbon source	butyrate (C)	+0.2	-0.2	+0.1	+0.0	-4.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.1	+0.3	+0.2	-4.6
carbon source	DL-3-Hydroxyisobutyric (C)	+0.4	-0.1	-0.2	+0.0	-4.0
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.1	-0.2	-0.1	-0.2	-3.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.0	+0.4	-0.2	-4.2
stress	R2A with Fusaric 240 ug/mL	+0.1	-0.0	+0.3	+0.2	-4.2
nitrogen source	nitrogen source nitrite 0.5mM	-0.1	-0.0	-0.4	+0.1	-2.9
nitrogen source	nitrogen source nitrite 0.5mM	-0.1	+0.1	+0.1	+0.2	-3.5
carbon source	BC Lignin Sorghum 10 vol% (C)	+0.2	-0.1	-0.1	-0.4	-2.5
carbon source	D-Glucose (C) 5 mM	-0.2	-0.0	+0.2	-0.1	-2.9
pH	D-Glucose (C) pH 6.5	-0.0	-0.1	-0.3	-0.1	-2.4
carbon source	1,3-Hexanediol (C)	-0.1	-0.4	-0.2	+0.1	-2.2
temperature shift	Temperature shift 30_to_25; with MOPS	+0.1	+0.0	-0.1	+0.1	-2.8
pH	Growth at pH9 and (C) Trisodium citrate	-0.7	-0.2	-0.3	+0.2	-1.7
carbon source	4-Aminobutyric 10 mM (C)	-0.3	+0.1	-0.2	+0.1	-1.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.0	+0.2	+0.1	-2.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.3	+0.0	+0.3	+0.3	-1.8
nitrogen source	NAG (N)	+0.3	+0.1	+0.1	+0.3	-2.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.1	+0.1	-0.6	-0.7	+1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.3	+0.3	-0.4	+2.2