Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0031	PP_0032	PP_0033	PP_0034	PP_0035
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	N.D.	+0.0	+0.3	-6.8
pH	Growth at pH7 and (C) Trisodium citrate	-0.0	N.D.	-0.1	-0.2	-3.2
temperature	Growth at 30C; with MOPS	-0.4	N.D.	-0.2	+0.3	-2.5
phage	PUT8 MOI 0.1	+0.0	N.D.	-0.0	-0.1	-2.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	N.D.	-0.1	+0.2	-3.0
carbon source	carbon source Bisabolene 48.9 mM	+0.0	N.D.	-0.3	-0.2	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4	N.D.	+0.1	+0.2	-2.1
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.3	N.D.	-0.0	-0.2	-2.3
pH	Growth at pH8 and (C) Trisodium citrate	+0.3	N.D.	-0.1	-0.2	-2.2
carbon source	Tween 20 (C)	-0.3	N.D.	-0.2	-0.5	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	N.D.	-0.3	-0.0	-2.4
carbon source	Vanillin (C)	-0.3	N.D.	-0.0	-0.2	-1.4
phage	P. putida Sci small MOI 0.1	+0.1	N.D.	-0.1	-0.1	-1.8
carbon source	pyruvate (C)	-0.4	N.D.	-0.2	-0.1	-1.2
no stress control	Growth with no stress	-0.0	N.D.	-0.2	-0.2	-1.3
carbon source	Butyl stearate (C)	-0.1	N.D.	-0.1	-0.2	-1.3
carbon source	D-Fructose (C)	-0.1	N.D.	-0.2	-0.3	-1.2
time series	Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement	-0.0	N.D.	-0.1	+0.3	-1.8
carbon source	5-Aminovaleric 10 mM (C)	-0.1	N.D.	-0.0	+0.0	-1.6
carbon source	L-tyrosine 5 mM (C)	-0.1	N.D.	+0.0	+0.0	-1.6
pH	pH 5	+0.2	N.D.	-0.1	-0.0	-1.7
phage	P. put PUT 10 MOI 0.1	+0.2	N.D.	-0.1	+0.1	-1.7
carbon source	L-Leucine (C)	+0.2	N.D.	-0.1	-0.1	-1.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.2	N.D.	-0.2	-0.4	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3	N.D.	+0.1	+0.2	-1.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	N.D.	+0.1	-0.0	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6	N.D.	+0.2	+0.5	-0.9
phage	P. putida PUT 7 MOI 1	-0.5	N.D.	-0.3	-0.2	+1.0
pH	Growth at pH7 and (C) D-Glucose	-0.4	N.D.	+0.1	-0.0	+1.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.1	-0.1	+2.7