Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0023	PP_0024	PP_0025	PP_0026	PP_0027
carbon source	D-Glucose (C); with MOPS	N.D.	-0.1	-5.2	+0.0	-0.3
nitrogen source	Urea (N)	N.D.	-0.2	-5.2	-0.0	+0.1
carbon source	butyrate (C)	N.D.	-0.0	-4.8	-0.0	-0.2
carbon source	D-Galacturonic Acid (C)	N.D.	-0.0	-4.3	-0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.0	-4.5	+0.3	-0.0
pH	Growth at pH7 and (C) D-Glucose	N.D.	-0.3	-3.1	-0.1	-0.0
temperature shift	Temperature shift 10_to_25; with MOPS	N.D.	-0.1	-2.9	-0.2	-0.1
phage	P. putida Sci Big MOI 0.1	N.D.	-0.3	-2.4	-0.1	-0.0
carbon source	Crotonic (C)	N.D.	+0.0	-2.6	-0.1	-0.1
pH	Growth at pH9 and (C) Trisodium citrate	N.D.	-0.2	-2.1	-0.2	-0.4
temperature shift	Temperature shift 10_to_34; with MOPS	N.D.	-0.1	-2.5	-0.1	-0.1
carbon source	ferulate (C); with MOPS	N.D.	-0.0	-2.6	-0.1	-0.0
carbon source	2,3-Butanediol (C)	N.D.	+0.1	-2.6	-0.0	-0.2
carbon source	L-Leucine (C)	N.D.	-0.2	-2.4	-0.1	+0.1
pH	Growth at pH6 and (C) D-Glucose	N.D.	-0.1	-2.6	+0.1	+0.2
carbon source	Valerolactone (C)	N.D.	+0.2	-3.2	+0.3	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	-0.1	-2.4	+0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-2.3	+0.1	-0.1
carbon source	Heptanoic (C)	N.D.	-0.2	-2.0	-0.1	-0.1
nitrogen source	NAG (N); with MOPS	N.D.	+0.0	-2.1	-0.1	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.1	-2.9	+0.0	+0.4
no stress control	Growth with no stress	N.D.	-0.4	-1.7	-0.3	+0.1
stress	Growth with Chloride 500 mM; with MOPS	N.D.	-0.1	-1.7	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.0	-1.7	-0.1	-0.3
nitrogen source	no extra (N); with MOPS	N.D.	-0.2	-1.8	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	-2.1	+0.0	-0.1
nitrogen source	2,6-diaminopimelic (N)	N.D.	+0.3	-1.6	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.0	+1.6	+0.2	+0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	N.D.	+0.1	+1.9	+0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	N.D.	-0.0	+3.0	+0.1	-0.3