Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0008 and PP_0009 are separated by 13 nucleotidesPP_0009 and PP_0010 are separated by 595 nucleotidesPP_0010 and PP_0011 are separated by 40 nucleotidesPP_0011 and PP_0012 are separated by 15 nucleotides PP_0008: PP_0008 - ribonuclease P protein component, at 8,394 to 8,798 _0008 PP_0009: PP_0009 - 50S ribosomal protein L34, at 8,812 to 8,946 _0009 PP_0010: PP_0010 - chromosomal replication initiator protein, at 9,542 to 11,062 _0010 PP_0011: PP_0011 - DNA polymerase III subunit beta, at 11,103 to 12,206 _0011 PP_0012: PP_0012 - DNA replication and repair protein, at 12,222 to 13,325 _0012
Group Condition PP_0008 PP_0009 PP_0010 PP_0011 PP_0012
carbon source 3-methyl-1-butanol (C) N.D. N.D. N.D. N.D. -1.0
carbon source 3-methyl-1-butanol (C) N.D. N.D. N.D. N.D. -0.7
nitrogen source L-Cysteine (N) N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. N.D. N.D. -0.6
pH Growth at pH6 and (C) D-Glucose N.D. N.D. N.D. N.D. -0.6
carbon source Ethyl decanoate and D-Glucose (C)s N.D. N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
nitrogen source L-Cysteine (N) N.D. N.D. N.D. N.D. -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. N.D. N.D. -0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM N.D. N.D. N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -0.5
carbon source Tween 20 (C) N.D. N.D. N.D. N.D. -0.5
pH pH 5 N.D. N.D. N.D. N.D. -0.5
nitrogen source Ammonium chloride and TNT (N) N.D. N.D. N.D. N.D. -0.5
carbon source Octanoic (C) N.D. N.D. N.D. N.D. -0.5
carbon source Tween 20 (C) N.D. N.D. N.D. N.D. -0.5
stress Growth with Chloride 500 mM; with MOPS N.D. N.D. N.D. N.D. -0.5
carbon source carbon source Bisabolene 48.9 mM N.D. N.D. N.D. N.D. -0.5
pH D-Glucose (C) pH 7 N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
nitrogen source TNT (N) N.D. N.D. N.D. N.D. -0.5
carbon source BC Lignin Sorghum 20 vol% (C) N.D. N.D. N.D. N.D. -0.5
carbon source L-Leucine (C) N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
carbon source Acetate Carbon Source (20mM) N.D. N.D. N.D. N.D. -0.5
nitrogen source Propiolactam (N) N.D. N.D. N.D. N.D. -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -0.5
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