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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_04871 and PFR28_04872 are separated by 218 nucleotides
PFR28_04872 and PFR28_04873 are separated by 125 nucleotides
PFR28_04873 and PFR28_04874 are separated by 178 nucleotides
PFR28_04874 and PFR28_04875 are separated by 175 nucleotides
PFR28_04871: PFR28_04871 - hypothetical protein, at 5,566,022 to 5,566,504
_04871
PFR28_04872: PFR28_04872 - Heat shock protein 15, at 5,566,723 to 5,567,127
_04872
PFR28_04873: PFR28_04873 - 33 kDa chaperonin, at 5,567,253 to 5,568,155
_04873
PFR28_04874: PFR28_04874 - Phosphoenolpyruvate carboxykinase (ATP), at 5,568,334 to 5,569,875
_04874
PFR28_04875: PFR28_04875 - hypothetical protein, at 5,570,051 to 5,570,317
_04875
Group
Condition
PFR28
_04871
PFR28
_04872
PFR28
_04873
PFR28
_04874
PFR28
_04875
carbon source
NAG carbon 10 mM
+0.0
-0.1
-0.5
-5.6
N.D.
carbon source
NAG carbon 10 mM
+0.0
+0.2
-0.5
-5.2
N.D.
carbon source
NAG (C) 10 mM
-0.2
+0.1
-0.0
-5.0
N.D.
carbon source
NAG carbon 10 mM
+0.2
+0.4
-0.1
-5.2
N.D.
carbon source
NAG (C) 10 mM
+0.3
+0.3
-0.2
-4.2
N.D.
carbon source
NAG (C) 10 mM
-0.0
+0.3
-0.1
-3.8
N.D.
carbon source
L-Malic (C) 10 mM
-0.2
-0.7
-0.3
-2.3
N.D.
carbon source
acetate carbon 10 mM
+0.1
-0.6
-0.1
-2.8
N.D.
carbon source
Trisodium citrate 10 mM (C)
+0.2
-0.2
-0.1
-3.3
N.D.
carbon source
Trisodium citrate 10 mM (C)
+0.3
-0.2
-0.4
-3.1
N.D.
carbon source
acetate carbon 10 mM
-0.0
-0.1
-0.2
-2.7
N.D.
carbon source
acetate (C) 30 mM
-0.0
+0.2
-0.3
-2.8
N.D.
carbon source
acetate (C) 30 mM
-0.0
-0.0
-0.1
-2.7
N.D.
carbon source
Citric Acid (C) 10 mM
+0.1
-0.1
+0.2
-2.9
N.D.
carbon source
Trisodium citrate (C) 10 mM
+0.0
+0.1
-0.2
-2.4
N.D.
carbon source
L-Malic (C) 10 mM
-0.1
-0.0
+0.2
-2.5
N.D.
carbon source
Citric Acid (C) 10 mM
-0.1
+0.2
+0.0
-2.6
N.D.
carbon source
Trisodium citrate 10 mM (C)
+0.3
-0.1
+0.2
-2.8
N.D.
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
+0.3
-0.2
-0.2
-2.2
N.D.
carbon source
Fumarate (C) 20 mM
+0.1
+0.1
-0.2
-2.4
N.D.
carbon source
L-Glutamic (C) 10 mM
-0.0
+0.3
-0.5
-2.0
N.D.
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
+0.3
-0.4
+0.1
-2.1
N.D.
carbon source
D,L-Malic Acid (C) 10 mM
+0.2
+0.4
-0.2
-2.4
N.D.
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM
+0.3
-0.1
+0.3
-2.3
N.D.
carbon source
Quinic Acid (C) 10 mM
+0.2
+0.0
+0.3
-2.4
N.D.
carbon source
Citric Acid (C) 10 mM
+0.1
+0.3
+0.3
-2.4
N.D.
carbon source
Quinic Acid (C) 10 mM
+0.3
-0.3
+0.5
-2.1
N.D.
carbon source
L-Lactate (C)
-0.1
+0.2
+0.7
-1.7
N.D.
carbon source
L-Leucine (C) 10 mM
+0.4
-0.5
+0.0
+2.0
N.D.
carbon source
L-Leucine (C) 10 mM
+0.5
+0.0
+0.3
+2.1
N.D.
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