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Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_04847 and PFR28_04848 are separated by 2 nucleotides
PFR28_04848 and PFR28_04849 are separated by 69 nucleotides
PFR28_04849 and PFR28_04850 overlap by 1 nucleotides
PFR28_04850 and PFR28_04851 are separated by 25 nucleotides
PFR28_04847: PFR28_04847 - Methionine import ATP-binding protein MetN, at 5,537,626 to 5,538,750
_04847
PFR28_04848: PFR28_04848 - D-methionine-binding lipoprotein MetQ, at 5,538,753 to 5,539,562
_04848
PFR28_04849: PFR28_04849 - Dimethyl-sulfide monooxygenase, at 5,539,632 to 5,540,990
_04849
PFR28_04850: PFR28_04850 - Dibenzothiophene desulfurization enzyme C, at 5,540,990 to 5,542,183
_04850
PFR28_04851: PFR28_04851 - Dibenzothiophene desulfurization enzyme C, at 5,542,209 to 5,543,450
_04851
Group
Condition
PFR28
_04847
PFR28
_04848
PFR28
_04849
PFR28
_04850
PFR28
_04851
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.8
+0.1
-0.1
-0.4
-0.2
carbon source
D,L-Malic Acid (C)
-0.5
+0.1
-0.2
-0.5
-0.1
carbon source
pyruvate (C)
-0.5
-0.0
-0.1
-0.4
-0.1
carbon source
methyl-trans-p-coumarate (C)
-0.4
-0.1
-0.0
-0.4
-0.1
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.4
-0.2
-0.2
+0.1
-0.2
carbon source
Inosine carbon 10 mM
-0.6
-0.0
-0.1
-0.2
+0.1
carbon source
butyrate (C) 10 mM
-0.8
+0.1
+0.1
-0.2
-0.1
carbon source
Cytidine (C)
-0.9
+0.3
-0.1
-0.1
+0.1
carbon source
Quinic Acid (C)
-0.4
+0.2
-0.1
-0.3
-0.1
carbon source
D-Glucose carbon 10 mM
-0.5
+0.2
-0.1
-0.1
-0.1
carbon source
sn-glycero-3-phosphocholine (C)
-0.4
+0.1
-0.1
-0.4
+0.3
carbon source
5-Aminovaleric carbon 10 mM
-0.6
+0.1
-0.2
+0.2
-0.1
carbon source
methyl ferulate (C)
-0.6
+0.4
-0.3
-0.1
+0.1
carbon source
octanoate (C)
-0.7
+0.3
+0.0
-0.1
+0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.4
+0.2
-0.1
-0.4
+0.2
carbon source
L-Lactate (C)
-0.7
+0.2
+0.0
-0.0
+0.0
carbon source
L-Lactate (C) 10 mM
+0.2
+0.2
-0.8
+0.0
+0.0
carbon source
L-Malic (C)
-0.5
+0.3
+0.1
-0.2
-0.2
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.2
-0.2
-0.2
+0.4
-0.1
carbon source
Cytidine (C)
-0.6
+0.3
-0.0
-0.1
+0.1
carbon source
butyrate (C)
-0.3
+0.3
-0.3
+0.1
-0.2
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
-0.1
+0.3
+0.3
+0.0
carbon source
Betaine (C)
-0.7
+0.4
+0.3
+0.1
-0.2
carbon source
butyrate (C) 10 mM
+0.1
+0.0
+0.4
+0.2
-0.7
carbon source
Shikimic Acid carbon 10 mM
-0.4
+0.3
-0.1
+0.2
+0.1
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
+0.2
-0.1
+0.6
+0.0
carbon source
p-Coumaric (C)
-0.2
+0.6
+0.1
+0.0
-0.1
carbon source
Vanillic Acid (C) 2.5 mM
-0.3
-0.0
+0.0
+0.4
+0.3
carbon source
Guanosine (C)
-0.3
+0.4
+0.3
-0.0
+0.2
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
+0.3
+0.1
+0.2
-0.3
+0.2
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