Fitness for 5 genes in Pseudomonas sp. RS175

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 385 experiments or choose conditions or try the comparative fitness browser

500 ntPFR28_04837 and PFR28_04838 are separated by 363 nucleotidesPFR28_04838 and PFR28_04839 overlap by 41 nucleotidesPFR28_04839 and PFR28_04840 are separated by 80 nucleotidesPFR28_04840 and PFR28_04841 are separated by 22 nucleotides PFR28_04837: PFR28_04837 - hypothetical protein, at 5,528,793 to 5,529,713 _04837 PFR28_04838: PFR28_04838 - hypothetical protein, at 5,530,077 to 5,530,916 _04838 PFR28_04839: PFR28_04839 - hypothetical protein, at 5,530,876 to 5,531,271 _04839 PFR28_04840: PFR28_04840 - putative protein YcgM, at 5,531,352 to 5,532,017 _04840 PFR28_04841: PFR28_04841 - putative FAD-linked oxidoreductase, at 5,532,040 to 5,533,458 _04841
Group Condition PFR28_04837 PFR28_04838 PFR28_04839 PFR28_04840 PFR28_04841
carbon source butyrate (C) 10 mM +0.4 -0.7 -0.7 +0.1 -0.2
carbon source Betaine (C) 2.5 mM +0.2 -0.2 -0.6 -0.3 -0.2
carbon source D-Trehalose (C) 5 mM -0.0 -0.0 +0.3 -0.8 +0.0
carbon source trans-aconitic (C) -0.1 +0.1 +0.2 -0.6 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.1 -0.2 +0.5 -0.9 +0.0
carbon source Betaine (C) +0.1 +0.2 -0.8 -0.1 +0.1
carbon source Fumarate (C) 20 mM +0.2 -0.1 +0.2 -0.5 -0.2
stress D-Glucose (C); with Chloride 400 mM -0.2 +0.1 -0.3 +0.3 -0.2
carbon source trans-aconitic (C) 5 mM -0.0 -0.0 +0.5 -0.6 +0.0
carbon source Azelaic carbon 10 mM -0.5 -0.1 +0.5 +0.3 -0.3
carbon source sn-glycero-3-phosphocholine (C) -0.3 -0.1 +0.4 +0.1 -0.3
carbon source NAG (C) 10 mM +0.1 +0.3 +0.3 -0.9 +0.1
carbon source Shikimic Acid (C) 10 mM -0.0 -0.0 +0.5 -0.5 +0.1
carbon source 4-Guanidinobutyric (C) +0.3 -0.1 -0.5 +0.3 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.3 -0.1 +0.6 -0.1 -0.1
carbon source Guanosine (C) -0.1 +0.2 -0.8 +0.3 +0.5
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.2 -0.1 +0.5 -0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.2 +0.1 -0.1 +0.6 -0.1
carbon source acetate (C) 30 mM +0.3 +0.0 +0.3 -0.5 +0.2
carbon source trans-aconitic (C) 5 mM +0.1 -0.1 +0.7 -0.3 -0.2
carbon source butyrate (C) -0.5 +0.1 +0.5 +0.1 +0.1
carbon source L-Phenylalanine carbon 5 mM -0.2 -0.0 +0.4 +0.4 -0.1
carbon source L-Leucine (C) 10 mM +0.3 -0.0 -0.3 +0.4 +0.1
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM +0.3 -0.1 +0.2 +0.5 -0.3
carbon source octanoate (C) -0.2 +0.1 +0.1 +0.5 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.1 -0.1 +0.6 -0.2 +0.3
carbon source Vanillic Acid (C) 2.5 mM -0.5 -0.0 +0.7 +0.6 -0.1
carbon source butyrate (C) 10 mM +0.1 -0.1 +1.0 -0.4 +0.1
carbon source L-Hydroxyproline carbon 10 mM -0.1 +0.0 +0.4 +0.5 +0.0
carbon source Inosine carbon 10 mM +0.2 -0.1 +0.3 +0.3 +0.2
remove
PFR28_04837
plot		 remove
PFR28_04838
plot		 remove
PFR28_04839		 remove
PFR28_04840
plot		 remove
PFR28_04841
plot